Primary Citation PubMed: 14962382
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Ligand-based Pharmacophore Modeling; Atom-based 3D-QSAR Analysis and Molecular Docking Studies of Phosphoinositide-Dependent Kinase-1 Inhibitors.
(2012) Indian J Pharm Sci 74
PubMed: 23325995 | PubMedCentral: PMC3546331 | DOI: 10.4103/0250-474X.103846
: In Silico Studies on PDK-1 Inhibitors REFERENCES 1 Lawlor MA Mora A Ashby PR Williams MR Murray-Tait V Malone L Essential role of PDK1 in regulating cell size and development in mice EMBO J 2002 14 ... 728 38 12110585 2 Pullen N Dennis PB Andjelkovic M Dufner A Kozma SC Hemmings BA Phosphorylation and Activation of p70s6k by PDK1 Science 1998 5351 707 10 9445476 3 Mora A Komander D van Aalten D Alessi D PDK1, the master regulator of AGC kinase signal transduction Sem Cell Dev Biol 2004 2 161 70 4 Vanhaesebroeck B Leevers SJ Ahmadi K Timms J Katso R Driscoll PC Synthesis and function of 3-Phosphorylated Inositol lipids Annu Rev Biochem 2001 1 535 602 11395417 5 Osaki M Oshimura M Ito H PI3K-Akt pathway: Its functions and alterations in human cancer Apoptosis 2004 6 667 76 15505410 6 Hanada M Feng J Hemmings BA Structure, regulation and function of PKB/AKT-a major therapeutic target Biochim Biophys Acta 2004 1-2 3 16 15023346 7 Zhang Q Thomas SM Lui VW Xi S Siegfried JM Fan H Phosphorylation of TNF- α converting enzyme by gastrin-releasing peptide induces amphiregulin release and EGF receptor activation PNAS 2006 18 6901 6 16641105 8 Baryawno N Sveinbjornsson B Eksborg S Chen CS Kogner P Johnsen JI Small-Molecule Inhibitors of Phosphatidylinositol 3-Kinase/Akt Signaling Inhibit Wnt/beta-Catenin Pathway Cross-Talk and Suppress Medulloblastoma Growth Cancer Res 2010 1 266 76 20028853 9 Zeng X Xu H Glazer RI Transformation of Mammary Epithelial Cells by 3-Phosphoinositide-dependent Protein Kinase-1 (PDK1) Is Associated with the Induction of Protein Kinase C Alpha Cancer Res 2002 12 3538 43 12068001 10 Flynn P Wong M Zavar M Dean NM Stokoe D Inhibition of PDK-1 activity causes a reduction in cell proliferation and survival Curr Biol 2000 22 1439 42 11102805 11 Berman HM Westbrook J Feng Z Gilliland G Bhat TN Weissig H The Protein Data Bank Nucleic Acids Res 2000 1 235 42 10592235 12 PDB codes: 2PE1, 1H1W, 1UVR, 1UU9, 1UU8, 1UU7, 1UU3, 1OKZ, 1OKY, 1Z5M, 3H9O, 3ION, 3IOP 13 Peifer C Alessi DR Small-Molecule Inhibitors of PDK1 Chem Med Chem 2008 12 1810 38 18972468 14 Dixon S Smondyrev A Knoll E Rao S Shaw D Friesner R PHASE: A new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1.
Publication Year: 2012
A simple extension to the CMASA method for the prediction of catalytic residues in the presence of single point mutations.
(2014) PLoS One 9
PubMed: 25268770 | PubMedCentral: PMC4182483 | DOI: 10.1371/journal.pone.0108513
We also consider 3HRC again with the template of 1UU9 and the catalytic residues D205-K207-E209-N210-T245 for another example of missing data; the catalytic residues in 1UU9 are the same as those in 3... RC.
Although the proteins 3HRC (the colors differ by element, and the identifiers are underlined) and 1UU9 have the variants with A209E (in grey, and the identifiers are not underlined), 3HRC lacks an atom in the side chain ( O ε 2 ).
Publication Year: 2014
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