Primary Citation PubMed: 15095869
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Published in 2015
arenicola coelomic Hb structures (PDB: 1hlb, 1hlm) were initially combined with a set of 9 additional Hb structures, representing vertebrate Ngb (1oj6), Cygb (1urv), Mb (2mm1), HbB (2hhb), plant Hbs (... lhl, 2oif), bacterial SDgbs (2wy4, 3s1j), and an invertebrate nerve globin (3mvc).
Fig 6 displays a maximum likelihood structural superposition of the echinoderm structure 1hlm (brown) with the Cygb structure 1urv (blue), as generated by StructAlign.
A maximum likelihood structural superposition of the 1urv structure (red) with the extension containing Cygb structure 2dc3 (cyan) essentially results in similar results ( S4 Fig ).
As shown in Fig 7 , the average pairwise RMSD is lower when comparing the echinoderms with 1urv (1.53Å vs. 1.73Å with 1oj6), and the length of the aligned region is also longer (145 residues, versus 141 for 1oj6).
g008 Fig 8 Analysis of pairwise per-site root mean square deviation (RMSD) between the echinoderm structures (1hlb, 1hlm) and the Ngb (1oj6) and Cygb (1urv) structures.
S4 Fig A Structural superposition of structures 1urv (red) and 2dc3 (cyan) using StructAlign.
g006 Fig 6 Structural superposition of the echinoderm structure 1hlm (brown) with the cytoglobin structure 1urv (blue).
Publication Year: 2015
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