Citations in PubMed

Primary Citation PubMed: 15297877 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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N-termini of fungal CSL transcription factors are disordered, enriched in regulatory motifs and inhibit DNA binding in fission yeast.

(2011) PLoS One 6

PubMed: 21858190 | PubMedCentral: PMC3155561 | DOI: 10.1371/journal.pone.0023650

The prediction results were in good agreement with the published C. elegans LAG1 crystal structure [19] (Entrez Structure:1TTU), showing a high prevalence of β-strands and several α-he... ices in the portion of the protein covered by the crystallographic study (data not shown).

Publication Year: 2011

Hyaline fibromatosis syndrome inducing mutations in the ectodomain of anthrax toxin receptor 2 can be rescued by proteasome inhibitors.

(2011) EMBO Mol Med 3

PubMed: 21328543 | PubMedCentral: PMC3377065 | DOI: 10.1002/emmm.201100124

We then used CDD (Marchler-Bauer et al, 2009 ) to gather a representative set of structures containing an Ig-like fold domain (2cxk, 2as5, 1vkx, 1imh, 1ttu, 1cyg, 1clu, 7cgt, 1qhp, 1uad, 2uzx, 1gji, 2... 2t, 1a3q, 2yrp, 1kcl and 1nfk), which were structurally superposed using Swiss-PdbViewer (Guex & Peitsch, 1997 ).

Publication Year: 2011

Dissecting and circumventing the requirement for RAM in CSL-dependent Notch signaling.

(2012) PLoS One 7

PubMed: 22876274 | PubMedCentral: PMC3410904 | DOI: 10.1371/journal.pone.0039093

The NTD-loop rearrangement is presumably required to bind MAML (red) without steric clash, as modeled here by structural alignment of worm CSL:DNA, RAM:CSL:DNA, and RAMANK:CSL:MAML:DNA, PDB codes 1TTU... (apo, purple), 3BRD (holo, wheat), and 2FO1 (MAML, red), respectively.

Publication Year: 2012

Understanding the folding-function tradeoff in proteins.

(2013) PLoS One 8

PubMed: 23593437 | PubMedCentral: PMC3625163 | DOI: 10.1371/journal.pone.0061222

The pdb IDs of the proteins, the total number of residues and the number of calculated contacts (if a specific chain or a specific set of residues from the pdb file are used, then this information is ... ppended at the end) are: 2AFG (129∶374:chain-A), 6I1B (153∶430), 1T9F (178∶532), 1SR4 (154∶367:chain-C), 1DQG (134∶388), 1UPS (131∶380: chain-A:290–420), 1JLY (153∶457:chain-A:1–153), 1WBA (171∶499), 1DFQ (193∶528: 1123–1315), 1DFC (119∶347:chain-A:1141–1259), 1HCD (118∶324), 1TTU (161∶428: chain-A:381–541), 1WD4 (162∶481:338–499).

Publication Year: 2013

A combination of computational and experimental approaches identifies DNA sequence constraints associated with target site binding specificity of the transcription factor CSL.

(2014) Nucleic Acids Res 42

PubMed: 25114055 | PubMedCentral: PMC4176381 | DOI: 10.1093/nar/gku730

Secondly, the FOLDX calculation using the Lag-1 (the CSL homologue in Caenorhabditis elegans ) structure (PDB ID 1TTU) bound to the consensus DNA sequence TGTGGGAA ( 15 ) also yielded a preference for... cytosine in position 1 (Supplementary Table S5).

Publication Year: 2014