Citations in PubMed

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PDB ID Mentions in PubMed Central Article count: 1

Citations in PubMed

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PDB ID Mentions in PubMed Central

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Comparing interfacial dynamics in protein-protein complexes: an elastic network approach.

(2010) BMC Struct Biol 10

PubMed: 20691107 | PubMedCentral: PMC2927602 | DOI: 10.1186/1472-6807-10-26

1 st 2 nd Interfaces of Type I 1a03 A B calcium-binding protein 90 90 l80 307l 82 37 45 obligate 1gdh A B oxidoreductase 320 320 640 6254 l48 74 74 obligate 1a05 A B oxidoreductase 357 357 7l4 5258 l2... 62 63 obligate 1ag1 O T isomerase 249 249 498 3025 75 37 38 obligate 1hii A B hydrolase 99 99 l98 3436 83 4l 42 obligate 1mdi A B electron transport/peptide l05 l3 ll8 l340 34 24 l0 non-obligate 2gsa A B chlorophyll biosynthesis 427 427 854 9l78 233 ll8 ll5 obligate 1ger A B oxidoreductase 448 448 896 6777 l72 86 86 obligate Interfaces ofType II 1azy A B glicosyltransferase 440 440 880 l744 42 2l 2l non-biological 1a0a A B transcription factor 63 63 l26 l860 44 22 22 obligate 1mv4 A B de novo protein 37 37 74 l833 43 2l 22 obligate 1a93 A B leucine zipper 32 32 64 l565 34 l7 l7 non-obligate 1a15 A B chemokine 67 67 l24 l480 38 l8 20 obligate 1q6a A B circadian clock protein l07 l07 2l4 l8l0 46 23 23 non-obligate Interfaces ofType III 2fhw B A signaling protein 27 24 5l ll53 29 l5 l4 obligate 1jm7 A B antitumor l03 97 200 2769 72 39 33 obligate 1tmz A B tropomyosin 32 32 64 l586 35 l7 l8 obligate 1an2 A C DNA-binding protein 86 86 l72 257l 64 32 32 obligate 2sic E I proteinase/inhibitor 275 l07 382 l6l7 45 3l l4 non-obligate 1lfa A B cell adhesion l83 l83 365 628 2l l0 ll non-biological 1shc A B signal transduction/peptide l95 ll 206 l456 34 25 9 non-obligate 2a93 A B leucine zipper 32 32 64 l568 34 l6 l8 non-obligate For each protein complex investigated in this work it is given: the PDB ID; the chains that form the considered interface; the classification, according to PRISM http://prism.ccbb.ku.edu.tr/prism/ ; the number of amino acids for the first and second chain listed, and the total number; the size of the interface in Å 2 and in number of amino acids involved; the number of interface amino acids in the first and second chain; the classification of the interface into biological obligate, biological non-obligate or non-biological, according to NOXclass [ 68 ].

(i) Protein length: As readily seen in Table 1 , the dataset covers a wide range of lengths, from 64 [PDB: 1a93 , 1tmz , 2a93 ] to 896 amino acids for oxidoreductase [PDB: 1ger ].

Publication Year: 2010