Primary Citation PubMed: 985462
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database.
(2007) Genome Biol 8
PubMed: 17335583 | PubMedCentral: PMC1868941 | DOI: 10.1186/gb-2007-8-3-r31
The α-carbon root mean square deviation (rmsd) between the X-ray structures (red) and reconstructed proteins (green) are 0.80 Å (1TIM-A) and 0.63 Å (1SYY-A), respectively.
Reconstructing protein A greedy algorithm and the evaluation criteria (global-fit score) presented by Kolodny and coworkers [ 15 ] were applied to measure the performance of 23-state structural alphabet (structural segments) in reconstructing the α-β-barrel protein (PDB code 1TIM-A [ 15 , 24 ]) and 38 structures (Additional data file 4) selected from the SCOP-516 set, which comprises 516 proteins.
Reconstruction of the (a) α-β-barrel protein (Protein Data Bank [PDB] code 1TIM-A ) and (b) ribonucleotide reductase (PDB code 1SYY-A ).
Publication Year: 2007
PMG: online generation of high-quality molecular pictures and storyboarded animations.
(2007) Nucleic Acids Res 35
PubMed: 17478496 | PubMedCentral: PMC1933120 | DOI: 10.1093/nar/gkm277
( B ) Simultaneous multiple representations: two chains isomerase (PDB code 1TIM).
Computer-based screening of functional conformers of proteins.
(2008) PLoS Comput Biol 4
PubMed: 18463705 | PubMedCentral: PMC2265533 | DOI: 10.1371/journal.pcbi.1000009
For every structure of the SCOP structural family 51351 (Triose Phosphate Isomerase family, including: 1TIM, 1AMK, 1CI1, 1HG3, 1M6J, 1B9B, 1TCD, 1TRE, 1YYA, 1HTI, 1R2R, 1MO0, 1YDV, 1YPI, 1WYI, 8TIM), ... e calculated their central residues.
Publication Year: 2008
Structure of triosephosphate isomerase from Cryptosporidium parvum.
(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67
PubMed: 21904056 | PubMedCentral: PMC3169408 | DOI: 10.1107/S1744309111019178
The first apo structure of TIM from chicken muscle was deposited in 1976 (PDB entry 1tim ; Banner et al. , 1976 ▶ ).
Publication Year: 2011
PubMed ID is not available.
Published in 2014
(C) Superimposed X-ray crystal structures of unliganded c TIM in the region of the N-terminal hinge: blue ribbon, wild-type c TIM (PDB entry 1TIM); green ribbon, unliganded L6RM of c TIM (PDB entry 4P... 1).
(E and F) Model for wild-type c TIM (PDB entry 1TIM), which shows, in red, the position in the protein structure where the binding of G3P results in significant values for δ NH (>0.1 ppm) for wild-type c TIM (E) or the L6RM (F).
(A) Wild-type c TIM (PDB entry 1TIM).
Publication Year: 2014
RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.