Primary Citation PubMed: 10097083
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Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members.
(2005) Nucleic Acids Res 33
PubMed: 16027112 | PubMedCentral: PMC1176014 | DOI: 10.1093/nar/gki702
The structural and topology diagrams were derived from the following PDB IDs: 1V33, 1G71 ( 8 ), 1RNI ( 25 ), 1M55 ( 59 ), 1F08 ( 54 ), 1QUV ( 92 ), 1MML ( 93 ), 1TGO ( 94 ), 1TAQ ( 95 ) and 1FX2 ( 96 ... .
Publication Year: 2005
Replicative DNA polymerases.
(2001) Genome Biol 2
PubMed: 11178285 | PubMedCentral: PMC150442 | DOI: null
(b) Thermococcus gorgorianus type B DNA polymerase  (PDB code: 1tgo).
Publication Year: 2001
Isolation and characterization of cidofovir resistant vaccinia viruses.
(2008) Virol J 5
PubMed: 18479513 | PubMedCentral: PMC2397383 | DOI: 10.1186/1743-422X-5-58
By modeling E9 on the crystal structure of Thermococcus gorgonariu DNA polymerase (PDB code 1TGO) it appears that the location of the M671I mutation is not far from the active site in the putative pol... merase domain (Figure 4 ).
Modeling The amino acid sequence of E9 was aligned with that of Thermostable B Type DNA Polymerase from Thermococcus gorgonariu (derived from PDB file 1TGO) by Blast.
Publication Year: 2008
Structures of an apo and a binary complex of an evolved archeal B family DNA polymerase capable of synthesising highly cy-dye labelled DNA.
(2013) PLoS One 8
PubMed: 23940661 | PubMedCentral: PMC3733885 | DOI: 10.1371/journal.pone.0070892
The apo pfu-E10 structure was solved by molecular replacement with AMORE  using Tgo DNA polymerase  (PDB code 1TGO) as the molecular replacement model.
Structure of Apo Pfu-E10 Polymerase The 2.4 Å resolution structure of apo Pfu-E10 was solved by molecular replacement using the structure of Tgo DNA polymerase (PDB code 1TGO)  as the search model.
Publication Year: 2013
An archaeal family-B DNA polymerase variant able to replicate past DNA damage: occurrence of replicative and translesion synthesis polymerases within the B family.
(2014) Nucleic Acids Res 42
PubMed: 25063297 | PubMedCentral: PMC4150786 | DOI: 10.1093/nar/gku683
Hydrogen bonds formed between the fingers domain loop aspartic acid or its equivalent (the amino acid shown in green and arrowed in Figure 1 ) and amino acids (shown in blue) in the subsequent ;... ;-helix DNA polymerase Data source Number of H bonds Hydrogen bonding partners a Sce-Pol α pdb, 4FVM 3 D929-H931 D929-K932 D929-R933 Sce-Pol δ pdb, 3IAY 3 D686-F688 D686-K689 D686-R690 Sce-Pol ϵ b pdb, 4M8O 1 D807-K811 Sce-Pol ζ b ‘Phyre2’ model 2 D1070-T1073 D1070-K1075 Pfu-Pol pdb, 2JGU 2 D473-I475 D473-K477 Pfu-Pol D473G b ‘Phyre2’ model 1 G473-K477 Tgo-Pol pdb, 1TGO 3 D472-I474 D472-E475 D472-K476 Tgo-Pol Z1 b ‘Phyre2’ model 3 D473-T476 D473-K478 D473-R479 Eco-Pol II c pdb, 3K5O 3 N485-L488 N485-S489 N485-A491 a The first residue shown is the aspartic acid (asparagine in the case of Eco-Pol II) in the loop region, the second the amino acids in the following α-helix.
Publication Year: 2014
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