Citations in PubMed

Primary Citation PubMed: 15313620 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Conformational sampling and nucleotide-dependent transitions of the GroEL subunit probed by unbiased molecular dynamics simulations.

(2011) PLoS Comput Biol 7

PubMed: 21423709 | PubMedCentral: PMC3053311 | DOI: 10.1371/journal.pcbi.1002004

Contact matrices were calculated for 28 closed (T) apo subunits (PDB code: 1XCK, 1SS8, 1OEL), 28 closed (T) ATP bound subunits (PDB code: 1KP8, 1SX3) and 28 open (R″) ADP bound subunits (PDB c... des: 1AON, 1SVT, 1SX4, and 1PF9), and 6000 snapshots obtained from the last 50 ns of the 12 independent MD simulations on the closed GroEL subunit (6 apo and 6 holo).

A total of 21 crystal structures (287 GroEL subunits) were kept for further analysis (PDB-codes: 1PCQ, 1PF9, 1SVT, 3C9V, 1AON, 1GRU, 1MNF, 1XCK, 2C7D, 2NWC, 3E76, 2EU1, 1SS8, 1SX3, 1J4Z, 1KPO, 2C7E, 1KP8, 1OEL, 1WE3, 1WF4).

Publication Year: 2011

Exploring a coarse-grained distributive strategy for finite-difference Poisson-Boltzmann calculations.

(2011) J Mol Model 17

PubMed: 21127924 | PubMedCentral: PMC3143316 | DOI: 10.1007/s00894-010-0904-4

These are: the 5S ribosomal RNA of the 70S ribosome (chain B of PDB id: 2J01, denoted rRNA), the p53 DNA binding domain tetramer in complex with DNA (PDB id: 2AC0, denoted p53 DBD), the GROEL heptamer... (PDB id: 1SX3, denoted GROEL), and the complete 70S ribosome (PDB id: 2J01 + 2J02, denoted the 70S ribosome).

Publication Year: 2011

A Mycobacterium leprae Hsp65 mutant as a candidate for mitigating lupus aggravation in mice.

(2011) PLoS One 6

PubMed: 21961033 | PubMedCentral: PMC3178518 | DOI: 10.1371/journal.pone.0024093

For comparison, the mouse Hsp60 was also modeled using the structural coordinates of the chaperonin GroEL from E. coli [PDB code 1SX3] [20] , which has 50% of amino acid sequence identity.

The mouse Hsp60 tridimensional model was generated based on the atomic coordinates of the Escherichia coli chaperonin GroEL [PDB code 1SX3] [20] , which shares 50% of sequence identity.

Publication Year: 2011