Citations in PubMed

Primary Citation PubMed: 15313620 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Reducing the false positive rate in the non-parametric analysis of molecular coevolution.

(2008) BMC Evol Biol 8

PubMed: 18402697 | PubMedCentral: PMC2362121 | DOI: 10.1186/1471-2148-8-106

Sites belonging to the same group of coevolution are shown in the crystal structure of one of the GroEL subunits (PDB accession number: 1svt.

Publication Year: 2008

Conformational sampling and nucleotide-dependent transitions of the GroEL subunit probed by unbiased molecular dynamics simulations.

(2011) PLoS Comput Biol 7

PubMed: 21423709 | PubMedCentral: PMC3053311 | DOI: 10.1371/journal.pcbi.1002004

The atomic models were prepared from the high-resolution crystal structures with PDB codes 1XCK chain A [69] and 1SVT chain A [58] , for the closed and open forms, resp... ctively.

Contact matrices were calculated for 28 closed (T) apo subunits (PDB code: 1XCK, 1SS8, 1OEL), 28 closed (T) ATP bound subunits (PDB code: 1KP8, 1SX3) and 28 open (R″) ADP bound subunits (PDB codes: 1AON, 1SVT, 1SX4, and 1PF9), and 6000 snapshots obtained from the last 50 ns of the 12 independent MD simulations on the closed GroEL subunit (6 apo and 6 holo).

The RMSd between the open and closed X-ray structure (PDB ids: 1SVT and 1XCK, respectively) is 12.30 Å.

A total of 21 crystal structures (287 GroEL subunits) were kept for further analysis (PDB-codes: 1PCQ, 1PF9, 1SVT, 3C9V, 1AON, 1GRU, 1MNF, 1XCK, 2C7D, 2NWC, 3E76, 2EU1, 1SS8, 1SX3, 1J4Z, 1KPO, 2C7E, 1KP8, 1OEL, 1WE3, 1WF4).

Publication Year: 2011

ATP-triggered conformational changes delineate substrate-binding and -folding mechanics of the GroEL chaperonin.

(2012) Cell 149

PubMed: 22445172 | PubMedCentral: PMC3326522 | DOI: 10.1016/j.cell.2012.02.047

For comparison, the crystal conformation bound to GroES (PDB ID 1SVT) is also shown (R-ES).

Figure 6 Footprint of GroES-Binding Sites on GroEL The rings are seen in space-filling format from above and in cut-away side view in (A) apo, (B) Rs1, (C) Rs-open, and (D) R-ES (PDB ID 1SVT) rings.

Two crystal structures were used as starting points—apo GroEL 14 (PDB ID 1OEL) and GroEL 14 -GroES 7 (PDB ID 1SVT; Chaudhry et al., 2004 ).

Publication Year: 2012

ATP-driven molecular chaperone machines.

(2013) Biopolymers 99

PubMed: 23877967 | PubMedCentral: PMC3814418 | DOI: 10.1002/bip.22361

Side (a,d) and top views (b,e) of unliganded GroEL and GroEL–GroES–ADP.AlF 3 complexes (PDB ID: 1OEL and 1SVT).

Two subunits, viewed from inside the folding chamber, of apo-GroEL, GroEL–Rs1, GroEL–Rs2, GroEL–Rs-open, and GroEL–GroES–ADP.AlF 3 complexes (EM Databank and PDB ID: EMD-1997/1OEL, EMD-1998/4AAQ, EMD-1999/4AAR, EMD-2000/4AAS, and 1SVT.

Publication Year: 2013

PubMed ID is not available.

Published in 2014

PubMedCentral: PMC4360534

Chaudhry C , Horwich A.L , Brunger A.T , Adams P.D , 2004 , Crystal structure of GroEL14-GroES7-(ADP-AlFx)7 , 1SVT ; , Publicly available at the RCSB Protein Data... Bank.

Publication Year: 2014