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In silico identification of functional divergence between the multiple groEL gene paralogs in Chlamydiae.
(2007) BMC Evol Biol 7
PubMed: 17519003 | PubMedCentral: PMC1892554 | DOI: 10.1186/1471-2148-7-81
B) Three-dimensional structure of one of the Escherichia coli GroEL homo-tetradecamer protein structure (PDB accession number: 1SS8).
Publication Year: 2007
Tracing conformational changes in proteins.
(2010) BMC Struct Biol 10 Suppl 1
PubMed: 20487508 | PubMedCentral: PMC2873824 | DOI: 10.1186/1472-6807-10-S1-S1
Figure 1 GroEL (a) The GroEL complex (PDB structure 1ss8).
We modeled the epical domain movement from the GroEL monomer (modeled from chain A of PDB code 1SS8) to the GroEL-GroES-ADP7 monomer (modeled from chain A of PDB code 1SX4).
Figure 1 shows an illustration of the closed structure of the GroEL 7-membered single ring complex taken from PDB code 1SS8 (Figure 1(a) ) and the opened structure (GroEL-GroES-ADP7) taken from PDB code 1SX4 (Figure 1(b) ).
Publication Year: 2010
Conformational sampling and nucleotide-dependent transitions of the GroEL subunit probed by unbiased molecular dynamics simulations.
(2011) PLoS Comput Biol 7
PubMed: 21423709 | PubMedCentral: PMC3053311 | DOI: 10.1371/journal.pcbi.1002004
A total of 21 crystal structures (287 GroEL subunits) were kept for further analysis (PDB-codes: 1PCQ, 1PF9, 1SVT, 3C9V, 1AON, 1GRU, 1MNF, 1XCK, 2C7D, 2NWC, 3E76, 2EU1, 1SS8, 1SX3, 1J4Z, 1KPO, 2C7E, 1... P8, 1OEL, 1WE3, 1WF4).
Contact matrices were calculated for 28 closed (T) apo subunits (PDB code: 1XCK, 1SS8, 1OEL), 28 closed (T) ATP bound subunits (PDB code: 1KP8, 1SX3) and 28 open (R″) ADP bound subunits (PDB codes: 1AON, 1SVT, 1SX4, and 1PF9), and 6000 snapshots obtained from the last 50 ns of the 12 independent MD simulations on the closed GroEL subunit (6 apo and 6 holo).
Publication Year: 2011
Adsorption characteristics of an enteric virus-binding protein to norovirus, rotavirus and poliovirus.
(2011) BMC Biotechnol 11
PubMed: 22176631 | PubMedCentral: PMC3262155 | DOI: 10.1186/1472-6750-11-123
Figure 6 Tertiary structure of the GroEL complex [PDB: 1SS8 ] .
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