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PDB ID Mentions in PubMed Central

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Generalized spring tensor models for protein fluctuation dynamics and conformation changes.

(2010) BMC Struct Biol 10 Suppl 1

PubMed: 20487510 | PubMedCentral: PMC2873826 | DOI: 10.1186/1472-6807-10-S1-S3

Table 1 The correlation coefficients between the experimental and calculated B-factors using different models Protein R(Å) ANM GNM STeM Protein R(Å) ANM GNM STeM Protein R(Å) A... M GNM STeM 1AAC 1.31 0.7 0.71 0.76 1ADS 1.65 0.77 0.74 0.71 1AHC 2.00 0.79 0.68 0.61 1AKY 1.63 0.56 0.72 0.6 1AMM 1.20 0.56 0.72 0.55 1AMP 1.80 0.62 0.59 0.68 1ARB 1.20 0.78 0.76 0.83 1ARS 1.80 0.14 0.43 0.41 1ARU 1.60 0.7 0.78 0.79 1BKF 1.60 0.52 0.43 0.5 1BPI 1.09 0.43 0.56 0.57 1CDG 2.00 0.65 0.62 0.71 1CEM 1.65 0.51 0.63 0.76 1CNR 1.05 0.34 0.64 0.42 1CNV 1.65 0.69 0.62 0.68 1CPN 1.80 0.51 0.54 0.56 1CSH 1.65 0.44 0.41 0.57 1CTJ 1.10 0.47 0.39 0.62 1CUS 1.25 0.74 0.66 0.76 1DAD 1.60 0.28 0.5 0.42 1DDT 2.00 0.21 -0.01 0.49 1EDE 1.90 0.67 0.63 0.75 1EZM 1.50 0.56 0.6 0.58 1FNC 2.00 0.29 0.59 0.61 1FRD 1.70 0.54 0.83 0.77 1FUS 1.30 0.4 0.63 0.61 1FXD 1.70 0.58 0.56 0.7 1GIA 2.00 0.68 0.67 0.69 1GKY 2.00 0.36 0.55 0.44 1GOF 1.70 0.75 0.76 0.78 1GPR 1.90 0.65 0.62 0.66 1HFC 1.50 0.63 0.38 0.35 1IAB 1.79 0.36 0.42 0.53 1IAG 2.00 0.34 0.52 0.44 1IFC 1.19 0.61 0.67 0.53 1IGD 1.10 0.18 0.44 0.27 1IRO 1.10 0.82 0.51 0.85 1JBC 1.15 0.72 0.7 0.73 1KNB 1.70 0.63 0.66 0.54 1LAM 1.60 0.53 0.63 0.71 1LCT 2.00 0.52 0.57 0.61 1LIS 1.90 0.16 0.43 0.3 1LIT 1.55 0.65 0.62 0.76 1LST 1.80 0.39 0.72 0.73 1MJC 2.00 0.67 0.67 0.61 1MLA 1.50 0.59 0.57 0.54 1MRJ 1.60 0.66 0.49 0.5 1NAR 1.80 0.62 0.76 0.74 1NFP 1.60 0.23 0.48 0.41 1NIF 1.70 0.42 0.58 0.61 1NPK 1.80 0.53 0.55 0.64 1OMP 1.80 0.61 0.63 0.65 1ONC 1.70 0.55 0.7 0.58 1OSA 1.68 0.36 0.42 0.55 1OYC 2.00 0.78 0.73 0.77 1PBE 1.90 0.53 0.61 0.63 1PDA 1.76 0.6 0.76 0.58 1PHB 1.60 0.56 0.52 0.59 1PHP 1.65 0.59 0.63 0.65 1PII 2.00 0.19 0.44 0.28 1PLC 1.33 0.41 0.47 0.42 1POA 1.50 0.54 0.66 0.42 1POC 2.00 0.46 0.52 0.39 1PPN 1.60 0.61 0.64 0.67 1PTF 1.60 0.47 0.6 0.54 1PTX 1.30 0.65 0.51 0.62 1RA9 2.00 0.48 0.61 0.53 1RCF 1.40 0.59 0.63 0.58 1REC 1.90 0.34 0.5 0.49 1RIE 1.50 0.71 0.25 0.52 1RIS 2.00 0.25 0.24 0.47 1RRO 1.30 0.08 0.31 0.36 1SBP 1.70 0.69 0.72 0.67 1SMD 1.60 0.5 0.62 0.67 1SNC 1.65 0.68 0.71 0.72 1THG 1.80 0.5 0.53 0.5 1TML 1.80 0.64 0.64 0.58 1UBI 1.80 0.56 0.69 0.61 1WHI 1.50 0.12 0.33 0.38 1XIC 1.60 0.29 0.4 0.47 2AYH 1.60 0.63 0.73 0.82 2CBA 1.54 0.67 0.75 0.8 2CMD 1.87 0.68 0.6 0.62 2CPL 1.63 0.61 0.6 0.72 2CTC 1.40 0.63 0.67 0.75 2CY3 1.70 0.51 0.5 0.67 2END 1.45 0.63 0.71 0.68 2ERL 1.00 0.74 0.73 0.85 2HFT 1.69 0.63 0.79 0.72 2IHL 1.40 0.62 0.69 0.72 2MCM 1.50 0.78 0.83 0.79 2MHR 1.30 0.65 0.52 0.64 2MNR 1.90 0.46 0.5 0.47 2PHY 1.40 0.54 0.55 0.68 2RAN 1.89 0.43 0.4 0.31 2RHE 1.60 0.28 0.38 0.33 2RN2 1.48 0.68 0.71 0.75 2SIL 1.60 0.43 0.5 0.51 2TGI 1.80 0.69 0.71 0.73 3CHY 1.66 0.61 0.75 0.68 3COX 1.80 0.71 0.71 0.72 3EBX 1.40 0.22 0.58 0.4 3GRS 1.54 0.44 0.57 0.59 3LZM 1.70 0.6 0.52 0.66 3PTE 1.60 0.68 0.83 0.77 4FGF 1.60 0.41 0.27 0.43 4GCR 1.47 0.73 0.81 0.75 4MT2 2.00 0.42 0.37 0.46 5P21 1.35 0.4 0.51 0.45 7RSA 1.26 0.42 0.63 0.59 8ABP 1.49 0.61 0.82 0.62 Column R(Å) gives the resolution of each structure.

Publication Year: 2010