Primary Citation PubMed: 10390350
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
Mastering the canonical loop of serine protease inhibitors: enhancing potency by optimising the internal hydrogen bond network.
(2011) PLoS One 6
PubMed: 21556330 | PubMedCentral: PMC3083445 | DOI: 10.1371/journal.pone.0019302
After confirming the identity of purified proteins by Western blot analysis, pro-KLKs were aliquoted and stored at −80°C. Molecular dynamics SFTI-FCQR variant/KLK4 complexes were gener... ted by overlay of KLK4 (PDB ID 2BDG) and the trypsin/SFTI-1 complex (PDB ID 1SFI) in SPDBV v4.01 (RSMD 0.96 Å)  while mutations were made in YASARA Dynamics 9.12.13  .
Results Molecular dynamics reveals a reduction in internal hydrogen bonds for SFTI-FCQR Asp 14 compared to SFTI-1 The contribution of various SFTI-1 residues to inhibitor rigidity and complex stability was examined by molecular dynamics simulations on the trypsin/SFTI-1 complex ( Figure 1A ; PDB ID 1SFI).
Publication Year: 2011
Structure of catalytic domain of Matriptase in complex with Sunflower trypsin inhibitor-1.
(2011) BMC Struct Biol 11
PubMed: 21693064 | PubMedCentral: PMC3141381 | DOI: 10.1186/1472-6807-11-30
Comparison with the trypsin:SFTI-1 complex (PDB ID = 1SFI ) reveals that the β-turn consisted of Phe12, Pro13, Asp14 and Gly1 of SFTI-1 adopts a slightly different conformation upon binding to... matriptase [ 27 , 28 ].
Max Bergmann lecture protein epitope mimetics in the age of structural vaccinology.
(2013) J Pept Sci 19
PubMed: 23349031 | PubMedCentral: PMC3592999 | DOI: 10.1002/psc.2482
The complexes with the Fc fragment (A) and trypsin (C) are computer models based upon crystal structures of target-bound phage (1DN2) or natural product (1SFI) leads.
Publication Year: 2013
Next generation sequencing and de novo transcriptomics to study gene evolution.
(2014) Plant Methods 10
PubMed: 25364374 | PubMedCentral: PMC4216380 | DOI: 10.1186/1746-4811-10-34
PawS1 is matured into two proteins [ 17 ] represented here as sphere-formatted structural models; a small peptide called SFTI-1 (cyan, PDB 1sfi [ 20 ]) and a heterodimeric seed storage albumin consist... ng of a small subunit (SSU, green) and a large subunit (LSU, orange), here represented by a Brassica napus napin structure (PDB BnIb [ 21 ]).
Publication Year: 2014
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics:
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.