Primary Citation PubMed: 10390350
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Mastering the canonical loop of serine protease inhibitors: enhancing potency by optimising the internal hydrogen bond network.
(2011) PLoS One 6
PubMed: 21556330 | PubMedCentral: PMC3083445 | DOI: 10.1371/journal.pone.0019302
After confirming the identity of purified proteins by Western blot analysis, pro-KLKs were aliquoted and stored at −80°C. Molecular dynamics SFTI-FCQR variant/KLK4 complexes were gener... ted by overlay of KLK4 (PDB ID 2BDG) and the trypsin/SFTI-1 complex (PDB ID 1SFI) in SPDBV v4.01 (RSMD 0.96 Å)  while mutations were made in YASARA Dynamics 9.12.13  .
Results Molecular dynamics reveals a reduction in internal hydrogen bonds for SFTI-FCQR Asp 14 compared to SFTI-1 The contribution of various SFTI-1 residues to inhibitor rigidity and complex stability was examined by molecular dynamics simulations on the trypsin/SFTI-1 complex ( Figure 1A ; PDB ID 1SFI).
Publication Year: 2011
Structure of catalytic domain of Matriptase in complex with Sunflower trypsin inhibitor-1.
(2011) BMC Struct Biol 11
PubMed: 21693064 | PubMedCentral: PMC3141381 | DOI: 10.1186/1472-6807-11-30
Comparison with the trypsin:SFTI-1 complex (PDB ID = 1SFI ) reveals that the β-turn consisted of Phe12, Pro13, Asp14 and Gly1 of SFTI-1 adopts a slightly different conformation upon binding to... matriptase [ 27 , 28 ].
Max Bergmann lecture protein epitope mimetics in the age of structural vaccinology.
(2013) J Pept Sci 19
PubMed: 23349031 | PubMedCentral: PMC3592999 | DOI: 10.1002/psc.2482
The complexes with the Fc fragment (A) and trypsin (C) are computer models based upon crystal structures of target-bound phage (1DN2) or natural product (1SFI) leads.
Publication Year: 2013
Next generation sequencing and de novo transcriptomics to study gene evolution.
(2014) Plant Methods 10
PubMed: 25364374 | PubMedCentral: PMC4216380 | DOI: 10.1186/1746-4811-10-34
PawS1 is matured into two proteins [ 17 ] represented here as sphere-formatted structural models; a small peptide called SFTI-1 (cyan, PDB 1sfi [ 20 ]) and a heterodimeric seed storage albumin consist... ng of a small subunit (SSU, green) and a large subunit (LSU, orange), here represented by a Brassica napus napin structure (PDB BnIb [ 21 ]).
Publication Year: 2014
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