Citations in PubMed

Primary Citation PubMed: 10390350 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Mastering the canonical loop of serine protease inhibitors: enhancing potency by optimising the internal hydrogen bond network.

(2011) PLoS One 6

PubMed: 21556330 | PubMedCentral: PMC3083445 | DOI: 10.1371/journal.pone.0019302

After confirming the identity of purified proteins by Western blot analysis, pro-KLKs were aliquoted and stored at −80°C. Molecular dynamics SFTI-FCQR variant/KLK4 complexes were gener... ted by overlay of KLK4 (PDB ID 2BDG) and the trypsin/SFTI-1 complex (PDB ID 1SFI) in SPDBV v4.01 (RSMD 0.96 Å) [39] while mutations were made in YASARA Dynamics 9.12.13 [40] .

Results Molecular dynamics reveals a reduction in internal hydrogen bonds for SFTI-FCQR Asp 14 compared to SFTI-1 The contribution of various SFTI-1 residues to inhibitor rigidity and complex stability was examined by molecular dynamics simulations on the trypsin/SFTI-1 complex ( Figure 1A ; PDB ID 1SFI).

Publication Year: 2011

Structure of catalytic domain of Matriptase in complex with Sunflower trypsin inhibitor-1.

(2011) BMC Struct Biol 11

PubMed: 21693064 | PubMedCentral: PMC3141381 | DOI: 10.1186/1472-6807-11-30

Comparison with the trypsin:SFTI-1 complex (PDB ID = 1SFI ) reveals that the β-turn consisted of Phe12, Pro13, Asp14 and Gly1 of SFTI-1 adopts a slightly different conformation upon binding to... matriptase [ 27 , 28 ].

Publication Year: 2011

Max Bergmann lecture protein epitope mimetics in the age of structural vaccinology.

(2013) J Pept Sci 19

PubMed: 23349031 | PubMedCentral: PMC3592999 | DOI: 10.1002/psc.2482

The complexes with the Fc fragment (A) and trypsin (C) are computer models based upon crystal structures of target-bound phage (1DN2) or natural product (1SFI) leads.

Publication Year: 2013

Next generation sequencing and de novo transcriptomics to study gene evolution.

(2014) Plant Methods 10

PubMed: 25364374 | PubMedCentral: PMC4216380 | DOI: 10.1186/1746-4811-10-34

PawS1 is matured into two proteins [ 17 ] represented here as sphere-formatted structural models; a small peptide called SFTI-1 (cyan, PDB 1sfi [ 20 ]) and a heterodimeric seed storage albumin consist... ng of a small subunit (SSU, green) and a large subunit (LSU, orange), here represented by a Brassica napus napin structure (PDB BnIb [ 21 ]).

Publication Year: 2014