Citations in PubMed

Primary Citation PubMed: 14981267 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database.

(2007) Genome Biol 8

PubMed: 17335583 | PubMedCentral: PMC1868941 | DOI: 10.1186/gb-2007-8-3-r31

For instance, a typical (κ, α) plot (blue diamond) of an all-β protein (human anti-HIV-1 GP120-reactive antibody E51, PDB code 1RZF-L [ 21 ]) is significantly different from th... t (red cross) of an all-α protein (human hemoglobin, PDB code 1J41-A [ 22 ]).

(a) The typical (κ, α) plots of an all-α protein (Protein Data Bank [PDB] code 1J41-A; red) and an all-β protein (PDB code 1RZF-L; blue).

Publication Year: 2007

Computational docking of antibody-antigen complexes, opportunities and pitfalls illustrated by influenza hemagglutinin.

(2011) Int J Mol Sci 12

PubMed: 21339984 | PubMedCentral: PMC3039950 | DOI: 10.3390/ijms12010226

Rosetta Antibody: 1RZG for the heavy-chain framework (71.68%) and 1RZF for the light chain (64.36%); 1BJM for L1 (same length, no identity), 1RZF for L2 (83.33%), and 1RZF for L3 (90.91%); 1RZG forH1 ... 62.50%), 1RHH for H2 (76.47%), and 1FAI for H3 (same length, no identity).

Publication Year: 2011

Influenza human monoclonal antibody 1F1 interacts with three major antigenic sites and residues mediating human receptor specificity in H1N1 viruses.

(2012) PLoS Pathog 8

PubMed: 23236279 | PubMedCentral: PMC3516549 | DOI: 10.1371/journal.ppat.1003067

Structures from PDB codes 2FB4 and 1RZF (1F1 Fab, variable domains and constant domains, respectively); 1RUZ (Av1918), or the 1F1 Fab and Av1918 coordinates reported here (1F1-SC1918 complex), were us... d as search models and total of 2 Fabs (1F1 Fab), 1 HA trimer (3 protomers) (Av1918), or two HA trimers (six protomers), 2 Fabs, and 4 sets of V H /V λ domains (1F1-SC1918 complex) were ordered in the asymmetric unit.

Publication Year: 2012

Structural basis for the recognition of human cytomegalovirus glycoprotein B by a neutralizing human antibody.

(2014) PLoS Pathog 10

PubMed: 25299639 | PubMedCentral: PMC4192593 | DOI: 10.1371/journal.ppat.1004377

The unrelated Fab fragment of the human anti-HIV-1 gp120 reactive antibody E51 (PDB ID 1rzf) was used as a search model for the SM5-1 Fab structure.

Publication Year: 2014