Primary Citation PubMed: 8648598
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DB-02, a C-6-cyclohexylmethyl substituted pyrimidinone HIV-1 reverse transcriptase inhibitor with nanomolar activity, displays an improved sensitivity against K103N or Y181C than S-DABOs.
(2013) PLoS One 8
PubMed: 24282600 | PubMedCentral: PMC3839930 | DOI: 10.1371/journal.pone.0081489
Due to the high structural similarity between HIV-1 RT/6-benzyl-1-(benzyloxymethyl) -5-isopropylpyrimidine-2,4(1H,3H)-dione (TNK-651) and DB-02, three-dimensional coordinates of the TNK-651 complex (B... ookhaven Protein Data Bank entry 1RT2) were used as the input structure for docking calculations.
The X-ray crystal structure of HIV-1 RT (PDB code: 1RT2) was downloaded from the Protein Data Bank (PDB) at the Research Collaboration for Structural Bioinformatics (http://www.rcsb.org/pdb/home/home.do).
Publication Year: 2013
Design and synthesis of tetrahydrophthalimide derivatives as inhibitors of HIV-1 reverse transcriptase.
(2013) Org Med Chem Lett 3
PubMed: 23968361 | PubMedCentral: PMC3847232 | DOI: 10.1186/2191-2858-3-8
HIV-1 RT enzyme (pdb code 1rt2 (shown in Figure 2 )) was taken from the RCSB, used as target protein [ 7 ].
Synthesis, HIV-1 RT inhibitory, antibacterial, antifungal and binding mode studies of some novel N-substituted 5-benzylidine-2,4-thiazolidinediones.
(2015) Daru 23
PubMed: 25617150 | PubMedCentral: PMC4308940 | DOI: 10.1186/s40199-014-0086-1
ligand (TNK-651) b) efavirenz c) compound 24 into the NNIBP of 1RT2 d) Glucosamine-6-Phosphate (2VF5) e) Ref ligand fluconazole (chimeric 1EA1) and compounds f) 10 in the active site of 2VF5 g) 4 in t... e active site of chimeric 1EA1.
Protein structure preparation The X-ray crystallographic structure of (PDB code 1RT2, 2VF5 and 1EA1) was obtained from Brookhaven Protein Data Bank (RCSB) [ 37 ].
Publication Year: 2015
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