Citations in PubMed

Primary Citation PubMed: 9309225 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Human enterovirus 71 subgenotype B3 lacks coxsackievirus A16-like neurovirulence in mice infection.

(2005) Virol J 2

PubMed: 16122396 | PubMedCentral: PMC1215528 | DOI: 10.1186/1743-422X-2-74

Alignment of the EV-71 B3 (SHA66) and EV-71 B4 (UH1) isolates RNA polymerase against the three-dimensional crystal structure of poliovirus 1 Mahoney strain 3D RNA polymerase (PDB: 1RDR ) was performed... to locate these mutations.

EV-71 subgenotype B3, B4 and CV-A16/G10 amino acid sequences were aligned against the poliovirus 1 Mahoney 3D RNA polymerase template sequences (PDB: 1RDR ).

Publication Year: 2005

Biochemical characterization of the fidelity of poliovirus RNA-dependent RNA polymerase.

(2007) Virol J 4

PubMed: 17524144 | PubMedCentral: PMC1904441 | DOI: 10.1186/1743-422X-4-44

The structure of 3D pol has been solved at 2.0 Å resolution and, like other DNA and RNA polymerases, resembles a right hand with fingers, palm, and thumb domains [ 13 , 14 ] {pdb: 1RDR and 1RA... }.

Publication Year: 2007

Structural explanation for the role of Mn2+ in the activity of phi6 RNA-dependent RNA polymerase.

(2008) Nucleic Acids Res 36

PubMed: 18940872 | PubMedCentral: PMC2582606 | DOI: 10.1093/nar/gkn632

This binding site is conserved across a number of viral RNA polymerases, such as West Nile virus (WNV: pdb ID 2HCN), foot-and-mouth disease virus (FMDV: pdb ID 1WNE), Norwalk virus (NV: pdb ID 1SH3), ... engue virus (DV: pdb ID 2J7U), poliovirus (PV: pdb ID 1RDR) and reovirus (RV: pdb ID 1MWH), although the bound ion appears to vary ( 25–30 ).

Evidence for Mg 2+ in place of H 2 O at Mn 2+ site RHDV 1khw 2.7 52 – 2.7 – Poor density in region of active site makes interpretation difficult NV 1sh3 2.8 52 Mg 2+ 3.0 0.9 Map and coordination geometry consistent with Mg 2+ NV 3bso 2.8 52 (H 2 O) 1.7 1.4 Water molecule present in equivalent position in the elongation complex DV 2j7u 2.8 50 Mg 2+ 1.9 1.8 Map and coordination geometry consistent with Mg 2+ PV 1rdr 2.9 33 Ca 2+ 2.4 2.1 From map and coordination geometry it is unlikely to be Ca 2+ RV 1mwh 2.9 42 Mn 2+ 2.5 1.0 Cap bound structure with Mn 2+ ion bound in equivalent site RV 1n35 2.8 42 – 2.5 – No ion present in equivalent position a RMSD of structurally matched Cα atom positions.

Publication Year: 2008

Evidence for a non-catalytic ion-binding site in multiple RNA-dependent RNA polymerases.

(2012) PLoS One 7

PubMed: 22792374 | PubMedCentral: PMC3394715 | DOI: 10.1371/journal.pone.0040581

RdRp of (I) rabbit hemorrhagic virus with a Lu 2+ ion (PDBid: 1KHV); (II) Norwalk virus with three Mn 2+ ions (PDBid: 3H5Y); (III) Dengue virus with a Mg 2+ ion (PDBid: 2J7U); ... IV) West Nile virus with a Ca 2+ ion (PDBid: 2HCN); (V) enterobacteria phage Qβ with a Ca 2+ ion (PDBid: 3AGP); (VI) foot-and-mouth disease virus with three Mg 2+ ions (PDBid: 2E9T); (VII) poliovirus with a Ca 2+ ion (PDBid: 1RDR); (VIII) infectious bursal disease virus with three Mg 2+ ions (PDBid: 2R72); and (IX) mammalian orthoreovirus 3 with a Mn 2+ ion (PDBid: 1MWH).

Publication Year: 2012