Citations in PubMed

Primary Citation PubMed: 14690597 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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All change: protein conformation and the ubiquitination reaction cascade.

(2009) F1000 Biol Rep 1

PubMed: 20948667 | PubMedCentral: PMC2920667 | DOI: 10.3410/B1-19

A comparison of the structure of a singly loaded E1 complex (APPBP1-UBA3-NEDD8-ATP, PDB code 1R4N [ 11 ], left-hand side) and that of the doubly loaded complex (PDB code 2NVU [ 8 ], right-hand side) e... egantly demonstrates the conformational switch within the E1 that accompanies double-loading of the E1 with its cognate Ubl.

Publication Year: 2009

A metal-based inhibitor of NEDD8-activating enzyme.

(2012) PLoS One 7

PubMed: 23185368 | PubMedCentral: PMC3501507 | DOI: 10.1371/journal.pone.0049574

The initial model of NAE was built from the X-ray crystal structure of the quaternary APPBP1-UBA3- NEDD8-ATP complex (PDB: 1R4N) [70] , according to a previously reported procedure.

Publication Year: 2012

Profiling the cross reactivity of ubiquitin with the Nedd8 activating enzyme by phage display.

(2013) PLoS One 8

PubMed: 23936405 | PubMedCentral: PMC3731359 | DOI: 10.1371/journal.pone.0070312

To further characterize the recognition of the C-terminal sequences of UB variants by NAE, we transplanted the C-terminal peptides of UB variants N1, N7 and N27 onto the Nedd8 scaffold and modeled the... binding of the Nedd8 mutants with NAE based on the crystal structure of Nedd8-NAE-ATP complex (PDB ID 1R4N) [16] .

Modeling of the NAE Recognition of the C-terminal Sequences of UB Variants from Phage Selection NAE-peptide models were generated on the basis of the Nedd8-NAE-ATP complex (PDB ID 1R4N) by replacing the native residues 71–75 with the residues of the respective peptides.

(a) Binding of Nedd8 to NAE in the Nedd8-NAE-ATP complex (PDB ID 1R4N) [16] .

Publication Year: 2013

Macromolecular juggling by ubiquitylation enzymes.

(2013) BMC Biol 11

PubMed: 23800009 | PubMedCentral: PMC3748819 | DOI: 10.1186/1741-7007-11-65

(a) The adenylation state based on the crystal structure of NAE1-UBA3 in complex with NEDD8 and ATP/Mg 2+ [PDB: 1R4N] [ 32 ].

Publication Year: 2013

Specialized Dynamical Properties of Promiscuous Residues Revealed by Simulated Conformational Ensembles.

(2013) J Chem Theory Comput 9

PubMed: 24250278 | PubMedCentral: PMC3827836 | DOI: 10.1021/ct400486p

The insets show the structures of the representative complexes (PDB ID 1xt9, chains B/A, and PDB ID 1r4n, chains J/C in the green and yellow insets, respectively).

Publication Year: 2013