Primary Citation PubMed: 14690597
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All change: protein conformation and the ubiquitination reaction cascade.
(2009) F1000 Biol Rep 1
PubMed: 20948667 | PubMedCentral: PMC2920667 | DOI: 10.3410/B1-19
A comparison of the structure of a singly loaded E1 complex (APPBP1-UBA3-NEDD8-ATP, PDB code 1R4N [ 11 ], left-hand side) and that of the doubly loaded complex (PDB code 2NVU [ 8 ], right-hand side) e... egantly demonstrates the conformational switch within the E1 that accompanies double-loading of the E1 with its cognate Ubl.
Publication Year: 2009
A metal-based inhibitor of NEDD8-activating enzyme.
(2012) PLoS One 7
PubMed: 23185368 | PubMedCentral: PMC3501507 | DOI: 10.1371/journal.pone.0049574
The initial model of NAE was built from the X-ray crystal structure of the quaternary APPBP1-UBA3- NEDD8-ATP complex (PDB: 1R4N)  , according to a previously reported procedure.
Publication Year: 2012
Profiling the cross reactivity of ubiquitin with the Nedd8 activating enzyme by phage display.
(2013) PLoS One 8
PubMed: 23936405 | PubMedCentral: PMC3731359 | DOI: 10.1371/journal.pone.0070312
To further characterize the recognition of the C-terminal sequences of UB variants by NAE, we transplanted the C-terminal peptides of UB variants N1, N7 and N27 onto the Nedd8 scaffold and modeled the... binding of the Nedd8 mutants with NAE based on the crystal structure of Nedd8-NAE-ATP complex (PDB ID 1R4N)  .
Modeling of the NAE Recognition of the C-terminal Sequences of UB Variants from Phage Selection NAE-peptide models were generated on the basis of the Nedd8-NAE-ATP complex (PDB ID 1R4N) by replacing the native residues 71–75 with the residues of the respective peptides.
(a) Binding of Nedd8 to NAE in the Nedd8-NAE-ATP complex (PDB ID 1R4N)  .
Publication Year: 2013
Macromolecular juggling by ubiquitylation enzymes.
(2013) BMC Biol 11
PubMed: 23800009 | PubMedCentral: PMC3748819 | DOI: 10.1186/1741-7007-11-65
(a) The adenylation state based on the crystal structure of NAE1-UBA3 in complex with NEDD8 and ATP/Mg 2+ [PDB: 1R4N] [ 32 ].
Specialized Dynamical Properties of Promiscuous Residues Revealed by Simulated Conformational Ensembles.
(2013) J Chem Theory Comput 9
PubMed: 24250278 | PubMedCentral: PMC3827836 | DOI: 10.1021/ct400486p
The insets show the structures of the representative complexes (PDB ID 1xt9, chains B/A, and PDB ID 1r4n, chains J/C in the green and yellow insets, respectively).
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