Citations in PubMed

Primary Citation PubMed: 14567920 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 11

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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The many faces of protein-protein interactions: A compendium of interface geometry.

(2006) PLoS Comput Biol 2

PubMed: 17009862 | PubMedCentral: PMC1584320 | DOI: 10.1371/journal.pcbi.0020124

The Protein Data Bank ( ) accession numbers for the structures mentioned in this paper are α-amylase from Bacillus licheniformis (1bli), aldehyde oxidoreductase of Desulfovi... rio desulfuricans (1dgj), Allium sativum lectin (1kj1), CO dehydrogenase of Hydrogenophaga pseudoflava (1ffu), DNA clamp loader complex (1sxj), fused domain pair of Scilla campanulata agglutinin (1dlp), guanine nucleotide exchange on Ran by the regulator of chromosome condensation (RCC1) (1i2m), haemagglutinin component (HA1) of the progenitor toxin from Clostridium botulinum (1qxm), Haemophilus ducreyi cytolethal distending toxin (1sr4), ClpB protein (1qvr), molybdenum cofactor-binding domain in CO dehydrogenase from Oligotropha carboxidovorans (1n60), Ran-binding domain complexed with Ran bound to a GTP analogue (1rrp).

Publication Year: 2006

Amyloid oligomer conformation in a group of natively folded proteins.

(2008) PLoS One 3

PubMed: 18800165 | PubMedCentral: PMC2528939 | DOI: 10.1371/journal.pone.0003235

(H) ClpB (Hsp104) [1qvr].

(H) ClpB (Hsp104) [1qvr].

Publication Year: 2008

The AAA+ superfamily of functionally diverse proteins.

(2008) Genome Biol 9

PubMed: 18466635 | PubMedCentral: PMC2643927 | DOI: 10.1186/gb-2008-9-4-216

The amino-terminal (D1) AAA+ modules of ClpB-type proteins are represented by a structure from T. thermophilus (right, PDB 1QVR ).

Publication Year: 2008

Motor mechanism for protein threading through Hsp104.

(2009) Mol Cell 34

PubMed: 19362537 | PubMedCentral: PMC2689388 | DOI: 10.1016/j.molcel.2009.02.026

The ClpB X-ray structure (PDB code:1QVR) was used for docking into the N-terminal density.

Publication Year: 2009

A newly discovered protein export machine in malaria parasites.

(2009) Nature 459

PubMed: 19536257 | PubMedCentral: PMC2725363 | DOI: 10.1038/nature08104

The top two matches, covering Pf HSP101 from residue 35 to the C-terminus, were to Thermus thermophilus ClpB (1QVR) at 38% pairwise sequence identity and to Escherichia coli ClpA (1R6B) at 33%.

The structure of the protein was modelled in MODELLER 40 with 1QVR, chain B, as a template, except in gapped regions and at the C-terminus, where 1R6B was used as a second template.

Publication Year: 2009

ATP-driven molecular chaperone machines.

(2013) Biopolymers 99

PubMed: 23877967 | PubMedCentral: PMC3814418 | DOI: 10.1002/bip.22361

Monomer structures of ClpA (a), ClpB (b), and the HslUV chaperone protease complex (c) (PDB ID: 1KSF, 1QVR, and 1KYI).

Publication Year: 2013

Elements in nucleotide sensing and hydrolysis of the AAA+ disaggregation machine ClpB: a structure-based mechanistic dissection of a molecular motor.

(2014) Acta Crystallogr D Biol Crystallogr 70

PubMed: 24531492 | PubMedCentral: PMC3940203 | DOI: 10.1107/S1399004713030629

Phasing of the ADP-bound wild-type structure was performed by molecular replacement using CNS with residues 520–854 of the full-length ClpB structure (PDB entry 1qvr ; Lee et al. , 2003 %... 6; ) as the search model.

Publication Year: 2014

Moyamoya disease-associated protein mysterin/RNF213 is a novel AAA+ ATPase, which dynamically changes its oligomeric state.

(2014) Sci Rep 4

PubMed: 24658080 | PubMedCentral: PMC3963067 | DOI: 10.1038/srep04442

(B) Homology model of AAA+ modules of mouse mysterin based on a crystal structure of Thermus thermophilus ClpB (PDB ID: 1QVR).

Publication Year: 2014

Head-to-tail interactions of the coiled-coil domains regulate ClpB activity and cooperation with Hsp70 in protein disaggregation.

(2014) Elife 3

PubMed: 24843029 | PubMedCentral: PMC4023160 | DOI: null

The following previously published datasets were used: Lee S , Sowa ME , Watanabe Y , Sigler PB , Chiu W , Yoshida M and Tsai FTF , 2003 , Crystal Structure Analysis of ClpBmophilus ClpB , http://www.... , Publicly available at PDB.

Moreover, a very similar intersubunit motif 1-motif 2 contact is seen in all the ClpB crystal structures, in which ClpB monomers are arranged in a spiral assembly ( Tth ClpB, 1QVR, Lee et al., 2003 ; Eco ClpB current study) ( Figure 4—figure supplement 1 ).

Publication Year: 2014

PubMed ID is not available.

Published in 2014

PubMedCentral: PMC4095912

Structure of the ClpB chaperone from Thermus thermophilus (1QVR).

Publication Year: 2014

trans-Acting arginine residues in the AAA+ chaperone ClpB allosterically regulate the activity through inter- and intradomain communication.

(2014) J Biol Chem 289

PubMed: 25253689 | PubMedCentral: PMC4239642 | DOI: 10.1074/jbc.M114.608828

A , the ClpB construct NBD1-M comprises amino acids 141–534, which are highlighted in dark gray in the crystal structure of full-length ClpB (Protein Data Bank code 1QVR ).

The structural close-up view is based on the available crystal structure of ClpB (Protein Data Bank code 1QVR ) and shows the catalytic site located in the interface between two NBD1 subunits ( green and yellow , respectively) with the conserved, trans -acting arginines Arg-322 and Arg-323 in close proximity to the ATP molecule bound to the neighboring subunit.

The available crystal structure of ClpB from T. thermophilus (Protein Data Bank code 1QVR ) exhibits a helical arrangement of subunits, thereby displaying a shifted subunit interface ( 7 ).

Publication Year: 2014