Citations in PubMed

Primary Citation PubMed: 10508787 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Metric learning for enzyme active-site search.

(2010) Bioinformatics 26

PubMed: 20870642 | PubMedCentral: PMC2958746 | DOI: 10.1093/bioinformatics/btq519

As for the weight values of acidic residues, the templates 1psa (pepsin) and 1qk2 (lysozyme) showed entirely different tendencies ( Supplementary Fig. 4a and b ).

Publication Year: 2010


Discriminative structural approaches for enzyme active-site prediction.

(2011) BMC Bioinformatics 12 Suppl 1

PubMed: 21342581 | PubMedCentral: PMC3044306 | DOI: 10.1186/1471-2105-12-S1-S49

Residues Template log( F pints ) Deviation 1 HIS 57 A, ASP 102 A, GLY 193 A, SER 195 A 1acb –53.37 0.83 2 ASP 137 A, ASP 194 A 1qk2 –14.00 0.66 3 ASP 137 A, ASP 194 A 2bvw –12.... 6 0.69 4 ASP 100 A, ASP 97 A 1qk2 –7.77 0.85 5 ASP 189 A, HIS 172 A 1emh –6.60 1.10 6 ASP 102 A, ASP 97 A 1qk2 –5.18 0.95 7 ASP 239 A, ASP 128 A 1qk2 –5.11 0.95 8 ASP 194 A, ASP 189 A 2bvw –5.08 0.96 9 ASP 97 A, HIS 57 A 1emh –2.79 1.25 10 ASP 61 A, HIS 40 A 1emh –2.62 1.26 Protein structure 1bio is used to generate this example.

Publication Year: 2011


Cellulase linkers are optimized based on domain type and function: insights from sequence analysis, biophysical measurements, and molecular simulation.

(2012) PLoS One 7

PubMed: 23139804 | PubMedCentral: PMC3490864 | DOI: 10.1371/journal.pone.0048615

This motif is was selected based on observed atomic coordinates from the GH6 CD xray structure, PDB id 1qk2 [51] .

Publication Year: 2012


Structural and mechanistic fundamentals for designing of cellulases.

(2012) Comput Struct Biotechnol J 2

PubMed: 24688647 | PubMedCentral: PMC3962180 | DOI: 10.5936/csbj.201209006

Structures were based on the PDB files 7CEL and 1QK2, respectively, and visualized using the software PyMol v0.99 (DeLano Scientific LLC).

Publication Year: 2012