Citations in PubMed

Primary Citation PubMed: 10441122 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Ligand scaffold hopping combining 3D maximal substructure search and molecular similarity.

(2009) BMC Bioinformatics 10

PubMed: 19671127 | PubMedCentral: PMC2739202 | DOI: 10.1186/1471-2105-10-245

Two of the RNase ligands display a bicephal structure ( 1QHC and 1JN4 ligands), one part based on the classic purine-like scaffolds, and the other based on a pyrimidine-like scaffolds, the two parts b... ing connected by a poly-phosphate chain linker.

Publication Year: 2009


Influence of naturally-occurring 5'-pyrophosphate-linked substituents on the binding of adenylic inhibitors to ribonuclease a: an X-ray crystallographic study.

(2009) Biopolymers 91

PubMed: 19191310 | PubMedCentral: PMC2816359 | DOI: 10.1002/bip.21158

Table I Categorized Binding of 5′-Phosphoadenosine-Based Inhibitors to RNase A Ring Stacking Partners (B 2 Subsite) N -glycosidic Torsion Angle, χ b P 1 Subsite Representatives His119 ... otamer a Adenine Subfragment Range in Degrees Ligand Compound PDB Entry Protein Chain c Reference Class Ia A Pentacyclic ring 293–314 (high- anti ) 5 ′ -P α pA 1Z6S A(A), B 26 pA-3 ′ -p 1O0F A, B 22 pA-2 ′ -p 1O0O B 22 Class Ib A Pentacyclic ring <293 ( anti /high- anti ) Not 5 ′ -P α pA 1Z6S A(B) 26 Class II A Hexacyclic ring 31–88 ( syn ) 5 ′ -P β ppA 1O0H A 22 ppA-3 ′ -p 1AFK A, B 20 ppA-2 ′ -p 1AFL A, B 20 dUppA 1JN4 A 27 pdUppA-3 ′ -p 1QHC A, B 21 pdTppA-3 ′ -p 1U1B A, B 28 Class III B Both rings 277 (high-anti) 2′-P pA-2′-p 1O0O A 22 a For rotamer A, χ 1 ≈ 150° and χ 2 ≈ −100°; for rotamer B, χ 1 ≈ −70° and χ 2 ≈ −60°.

Publication Year: 2009