Primary Citation PubMed: 10366505
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RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited--bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure.
(2002) BMC Bioinformatics 3
PubMed: 11929612 | PubMedCentral: PMC102759 | DOI: null
DNA:m 6 A MTases: M.Taq I (1g38 in PDB) [ 29 ] in yellow, M.Rsr I (leg2) [ 55 ] in red, M.Dpn M (2dpm) [ 56 ] in green; RNA:m 6 A MTase ErmC' (1qao) [ 24 ] in blue; DNA:m 4 C MTase M.Pvu II (1boo) [ 5... ] in cyan; Mj0882 (1dus) in magenta.
Publication Year: 2002
Natural history of S-adenosylmethionine-binding proteins.
(2005) BMC Struct Biol 5
PubMed: 16225687 | PubMedCentral: PMC1282579 | DOI: 10.1186/1472-6807-5-19
Structural similarity between SPOUT-fold and Rossmann-fold methyltransferases (i.e. DALI Z-score = 3.1 for 88 aa with RMSD = 3.7 and sequence identity = 17% for PDB structures 1QAO and 1MXI ) is confi... ed mainly to the N-terminal half of those folds.
Publication Year: 2005
Sequence and structural evolution of the KsgA/Dim1 methyltransferase family.
(2008) BMC Res Notes 1
PubMed: 18959795 | PubMedCentral: PMC2614427 | DOI: 10.1186/1756-0500-1-108
SAM was modeled into the KsgA active site by using the co-crystal structure of ErmC' in complex with SAM ( 1QAO [ 23 ]) as a guide.
Publication Year: 2008
Rosetta in CAPRI rounds 13-19.
(2010) Proteins 78
PubMed: 20597089 | PubMedCentral: PMC2952713 | DOI: 10.1002/prot.22784
Instead, the SAM moiety was transformed to adopt a binding mode similar to that in the ErmC′ structure (PDB entry: 1QAO 8 ); full-atom refinement was performed under the Rosetta energy functio... augmented with restraints that preserved hydrogen bonding and packing interactions, analogous to those observed for ErmC′.
Publication Year: 2010
Structural basis for S-adenosylmethionine binding and methyltransferase activity by mitochondrial transcription factor B1.
(2013) Nucleic Acids Res 41
PubMed: 23804760 | PubMedCentral: PMC3763538 | DOI: 10.1093/nar/gkt547
Shown are another adenine N6-specific rRNA methyltransferase [ErmC′; yellow; PDB 1QAO; ( 44 )], a large rRNA subunit methyltransferase [NSUN4, beige; PDB 4FZV; ( 45 )], a tRNA methyltransferas... [Trm14; pink; PDB 3TM4; ( 46 )], a DNA methyltransferase [MTaqI; brown; PBD 2ADM; ( 47 )] and a small-molecule methyltransferase [COMT, green; PDB 1VID ( 48 )].
Publication Year: 2013
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