Citations in PubMed

Primary Citation PubMed: 12928438 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Binding Energy calculation of GSK-3 protein of Human against some anti-diabetic compounds of Momordica charantia linn (Bitter melon).

(2012) Bioinformation 8

PubMed: 22493531 | PubMedCentral: PMC3321233 | DOI: 10.6026/97320630008251

Methodology Protein Retrieval and Receptor Preparation : Glycogen synthase kinase-3 (GSK-3) was downloaded from RCSB protein data bank having PDB ID 1Q5K ( Figure 2 ) and selected for docking analysis...

Publication Year: 2012


Small-Molecule Inhibitors of GSK-3: Structural Insights and Their Application to Alzheimer's Disease Models.

(2012) Int J Alzheimers Dis 2012

PubMed: 22888461 | PubMedCentral: PMC3408674 | DOI: 10.1155/2012/381029

Docking of 90 into the PDB structure 1Q5K of GSK-3 β suggested that one nitrogen and the secondary amine form hydrogen bonds to the hinge region at the Val135 NH and carbonyl, respectively.

PDB code 1Q5K [ 131 ].

Several small-molecule inhibitor/GSK-3 complexes can be extracted from the Protein Data Bank (PDB) (PDB codes: 3PUP (15), 1Q4L (25), 1Q3D (25), 1Q41 (25), 1Q3W (25), 1R0E (34), 2OW3 (40), 2JLD (55), 3M1S (56), 1UV5 (65), 3I4B (113), 3F7Z (119), 3F88 (119), 3GB2 (120), 1Q5K (124), 2O5K (127), 3L1S (130), 3Q3B (136), 1I09 (138)).

Publication Year: 2012


Implementation of multiple-instance learning in drug activity prediction.

(2012) BMC Bioinformatics 13 Suppl 15

PubMed: 23046442 | PubMedCentral: PMC3439725 | DOI: 10.1186/1471-2105-13-S15-S3

Table 8 Validations on the prediction of bioactive conformers ID a Name b PDB ID c Contribution d Rank e n i f 23 AR 1Q5K 2.792 3 117 37 Benzoimidazole-1 2O5K 0 N.A. g 138 50 Jonjon-1 2OW3 2.827 6 38 ... 9 LM-4 1Q3W 0.858 1 2 60 LM-5 1UV5 11.941 1 3 77 LM-29 1Q41 8.576 2 7 97 Maleimide 1R0E 0 N.A. g 121 98 OxaD-0 3F7Z 10.629 1 53 99 OxaD-00 3GB2 4.637 2 9 153 Pyzo-11 3L1S 10.371 1 11 198 RM-0 1Q4L 5.568 2 25 199 Staurosporine 1Q3D 22.359 1 5 a Molecule index in the data set; b molecular name in the data set; c Protein Data Bank index for the protein structure from which the experimental conformer was extracted; d contribution f C i j * calculated using equation 6; e the rank in the set of contributions; f the number of conformers for each molecule; g the rank cannot be determined and the conformer was predicted to be irrelevant to classification based on the MILES method.

Publication Year: 2012


PubMed ID is not available.

Published in 2009

PubMedCentral: PMC3828845

Molecular docking procedures The protein ligand docking studies were performed on the basis of the crystal structures of GSK-3β in complex with AR-A014418 (pdb entry 1q5k) [ 58 ].

Publication Year: 2009


Drug activity prediction using multiple-instance learning via joint instance and feature selection.

(2013) BMC Bioinformatics 14 Suppl 14

PubMed: 24267824 | PubMedCentral: PMC3850986 | DOI: 10.1186/1471-2105-14-S14-S16

Receptor grid preparation We downloaded a set of 20 PDB structural files of GSK-3 β from the RCSB Protein DataBank (PDB) [ 29 ] (PDB IDs: 1H8F, 109U, 1Q3D, 1Q3W, 1Q4L, 1Q5K, 1Q41, 1R0E, 1UV5, ... O5K, 2OW3, 3DU8, 3F7Z, 3F88, 3GB2, 3I4B, 3Q3B, 3ZRK, 3ZRL, and 3ZRM).

Publication Year: 2013