Primary Citation PubMed: 14529625
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
Small-Molecule Inhibitors of GSK-3: Structural Insights and Their Application to Alzheimer's Disease Models.
(2012) Int J Alzheimers Dis 2012
PubMed: 22888461 | PubMedCentral: PMC3408674 | DOI: 10.1155/2012/381029
PDB code 1Q3W [ 31 ].
Several small-molecule inhibitor/GSK-3 complexes can be extracted from the Protein Data Bank (PDB) (PDB codes: 3PUP (15), 1Q4L (25), 1Q3D (25), 1Q41 (25), 1Q3W (25), 1R0E (34), 2OW3 (40), 2JLD (55), 3M1S (56), 1UV5 (65), 3I4B (113), 3F7Z (119), 3F88 (119), 3GB2 (120), 1Q5K (124), 2O5K (127), 3L1S (130), 3Q3B (136), 1I09 (138)).
Publication Year: 2012
Implementation of multiple-instance learning in drug activity prediction.
(2012) BMC Bioinformatics 13 Suppl 15
PubMed: 23046442 | PubMedCentral: PMC3439725 | DOI: 10.1186/1471-2105-13-S15-S3
Table 8 Validations on the prediction of bioactive conformers ID a Name b PDB ID c Contribution d Rank e n i f 23 AR 1Q5K 2.792 3 117 37 Benzoimidazole-1 2O5K 0 N.A. g 138 50 Jonjon-1 2OW3 2.827 6 38 ... 9 LM-4 1Q3W 0.858 1 2 60 LM-5 1UV5 11.941 1 3 77 LM-29 1Q41 8.576 2 7 97 Maleimide 1R0E 0 N.A. g 121 98 OxaD-0 3F7Z 10.629 1 53 99 OxaD-00 3GB2 4.637 2 9 153 Pyzo-11 3L1S 10.371 1 11 198 RM-0 1Q4L 5.568 2 25 199 Staurosporine 1Q3D 22.359 1 5 a Molecule index in the data set; b molecular name in the data set; c Protein Data Bank index for the protein structure from which the experimental conformer was extracted; d contribution f C i j * calculated using equation 6; e the rank in the set of contributions; f the number of conformers for each molecule; g the rank cannot be determined and the conformer was predicted to be irrelevant to classification based on the MILES method.
Drug activity prediction using multiple-instance learning via joint instance and feature selection.
(2013) BMC Bioinformatics 14 Suppl 14
PubMed: 24267824 | PubMedCentral: PMC3850986 | DOI: 10.1186/1471-2105-14-S14-S16
Receptor grid preparation We downloaded a set of 20 PDB structural files of GSK-3 β from the RCSB Protein DataBank (PDB) [ 29 ] (PDB IDs: 1H8F, 109U, 1Q3D, 1Q3W, 1Q4L, 1Q5K, 1Q41, 1R0E, 1UV5, ... O5K, 2OW3, 3DU8, 3F7Z, 3F88, 3GB2, 3I4B, 3Q3B, 3ZRK, 3ZRL, and 3ZRM).
The selected conformers are clustered into eight groups based on their shape complementarity to the receptor grids (PDB IDs: 1Q3W, 1Q4L, 1R0E, 1UV5, 2OW3, F88, 3GB2, 3ZRM).
Publication Year: 2013
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.