Primary Citation PubMed: 14529625
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Trypanosoma brucei glycogen synthase kinase-3, a target for anti-trypanosomal drug development: a public-private partnership to identify novel leads.
(2011) PLoS Negl Trop Dis 5
PubMed: 21483717 | PubMedCentral: PMC3071371 | DOI: 10.1371/journal.pntd.0001017
Modelling The crystal structure of human GSK-3 beta complexed with staurosporine (pdb entry 1q3d) was used as the basis for modelling work.
Publication Year: 2011
Small-Molecule Inhibitors of GSK-3: Structural Insights and Their Application to Alzheimer's Disease Models.
(2012) Int J Alzheimers Dis 2012
PubMed: 22888461 | PubMedCentral: PMC3408674 | DOI: 10.1155/2012/381029
Several small-molecule inhibitor/GSK-3 complexes can be extracted from the Protein Data Bank (PDB) (PDB codes: 3PUP (15), 1Q4L (25), 1Q3D (25), 1Q41 (25), 1Q3W (25), 1R0E (34), 2OW3 (40), 2JLD (55), 3... 1S (56), 1UV5 (65), 3I4B (113), 3F7Z (119), 3F88 (119), 3GB2 (120), 1Q5K (124), 2O5K (127), 3L1S (130), 3Q3B (136), 1I09 (138)).
PDB code 1Q3D [ 31 ].
Publication Year: 2012
Implementation of multiple-instance learning in drug activity prediction.
(2012) BMC Bioinformatics 13 Suppl 15
PubMed: 23046442 | PubMedCentral: PMC3439725 | DOI: 10.1186/1471-2105-13-S15-S3
Table 8 Validations on the prediction of bioactive conformers ID a Name b PDB ID c Contribution d Rank e n i f 23 AR 1Q5K 2.792 3 117 37 Benzoimidazole-1 2O5K 0 N.A. g 138 50 Jonjon-1 2OW3 2.827 6 38 ... 9 LM-4 1Q3W 0.858 1 2 60 LM-5 1UV5 11.941 1 3 77 LM-29 1Q41 8.576 2 7 97 Maleimide 1R0E 0 N.A. g 121 98 OxaD-0 3F7Z 10.629 1 53 99 OxaD-00 3GB2 4.637 2 9 153 Pyzo-11 3L1S 10.371 1 11 198 RM-0 1Q4L 5.568 2 25 199 Staurosporine 1Q3D 22.359 1 5 a Molecule index in the data set; b molecular name in the data set; c Protein Data Bank index for the protein structure from which the experimental conformer was extracted; d contribution f C i j * calculated using equation 6; e the rank in the set of contributions; f the number of conformers for each molecule; g the rank cannot be determined and the conformer was predicted to be irrelevant to classification based on the MILES method.
Drug activity prediction using multiple-instance learning via joint instance and feature selection.
(2013) BMC Bioinformatics 14 Suppl 14
PubMed: 24267824 | PubMedCentral: PMC3850986 | DOI: 10.1186/1471-2105-14-S14-S16
Receptor grid preparation We downloaded a set of 20 PDB structural files of GSK-3 β from the RCSB Protein DataBank (PDB) [ 29 ] (PDB IDs: 1H8F, 109U, 1Q3D, 1Q3W, 1Q4L, 1Q5K, 1Q41, 1R0E, 1UV5, ... O5K, 2OW3, 3DU8, 3F7Z, 3F88, 3GB2, 3I4B, 3Q3B, 3ZRK, 3ZRL, and 3ZRM).
Publication Year: 2013
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