Primary Citation PubMed: 12852786
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Mapping of protein phosphatase-6 association with its SAPS domain regulatory subunit using a model of helical repeats.
(2009) BMC Biochem 10
PubMed: 19835610 | PubMedCentral: PMC2765987 | DOI: 10.1186/1471-2091-10-24
The highest score models (Figure 5 ) were based on: 1) importin alpha ARM repeat structures (PDB ID 2C1T , 1IAL , 1Q1S ) (line 2, Figure 4 ), and 2) beta-catenin ARM domain, ( 1I7W , 1JDH ) (line 3 Fi... ure 4 ).
Publication Year: 2009
Targeting nuclear import shuttles, importins/karyopherins alpha by a peptide mimicking the NF?B1/p50 nuclear localization sequence.
(2013) J Am Heart Assoc 2
PubMed: 24042087 | PubMedCentral: PMC3835248 | DOI: 10.1161/JAHA.113.000386
We selected a crystal structure of simian‐virus‐40 large T‐antigen (SV40) NLS bound to mouse Imp α1, 22 available at RCSB Protein Data Bank (PDB ID: 1Q1S).
For practical reasons, we reduced the length of the SV40 NLS sequence to 7 residues: KKKRKVE (42 rotatable bonds), then generated 3‐D coordinates and modeled its docking to the major NLS binding site of mouse Imp α1 (PDB ID: 1Q1S Chain C).
The resulting ligand conformations were analyzed in PythonMoleculeViewer (PMV) and compared to the known crystal structure of this NLS (PDB ID: 1Q1S Chain B).
Publication Year: 2013
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