Primary Citation PubMed: 14527411
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
Coverage of whole proteome by structural genomics observed through protein homology modeling database.
(2006) J Struct Funct Genomics 7
PubMed: 17146617 | PubMedCentral: PMC1769342 | DOI: 10.1007/s10969-006-9010-3
Table 2 Top 15 modeling templates in the newly determined 3D structures between 2002 and 2003 PDBID Chain Number of uses as a template SG a Protein name 1q12 A 7,031 N Maltose/maltodextrin tra... sport ATP-binding protein MalK 1l2t A 6,529 N Hypothetical ABC transporter ATP-binding protein Mj0796 1oxx K 3,948 N ABC transporter ATP-binding protein GlcV 1pf4 A 3,202 N Transport ATP-Binding Protein MsbA 1nr0 A 2,640 Y Actin interacting protein 1 Aip1 1ixc A 2,495 N LysR-type regulatory protein CbnR 1ld8 A 2,410 N Farnesyltransferase α subunit 1ji0 A 2,331 Y ABC transporter 1oyw A 2,251 N ATP-dependent DNA helicase; RecQ helicase 1kt1 A 2,198 N Fk506-binding protein FKBP51 1mt0 A 1,961 N Haemolysin secretion ATP-binding protein; ATP-binding domain 1mdb A 1,745 N 2,3-dihydroxybenzoate-AMP ligase DhbE 1nnm A 1,730 N Acetyl-CoA synthetase 1gxr A 1,715 N Transducin-like enhancer protein 1 Esg1 1uoh A 1,706 N 26S proteasome non-ATPase regulatory subunit 10 a PDB entry seemingly derived from the SG projects judged by description in PDB file is tagged Y, and the remaining entry is tagged N Whole structure and function of proteins from homology modeling of domain structures Protein function prediction, especially studies on enzyme specificity, based on homology modeling structures is intensively carried out in the field of drug design and related fields (Goldsmith-Fischman and Honig 2003 ; Kopp and Schwede 2004 ).
Publication Year: 2006
Mutations at the signature sequence of CFTR create a Cd(2+)-gated chloride channel.
(2009) J Gen Physiol 133
PubMed: 19114635 | PubMedCentral: PMC2606936 | DOI: 10.1085/jgp.200810049
The crystal structure of Escherichia coli Malk NBD dimer (Protein Data Bank code 1Q12) was used to demonstrate these interactions.
Publication Year: 2009
Stable ATP binding mediated by a partial NBD dimer of the CFTR chloride channel.
(2010) J Gen Physiol 135
PubMed: 20421370 | PubMedCentral: PMC2860585 | DOI: 10.1085/jgp.201010399
1Q12 ) was used to illustrate these interactions.
Publication Year: 2010
Insights into how nucleotide-binding domains power ABC transport.
(2009) Structure 17
PubMed: 19748342 | PubMedCentral: PMC2896483 | DOI: 10.1016/j.str.2009.07.009
For MalK we used the PDB:1Q12 structure ( Chen et al., 2003 ).
We assumed that this residue is in contact with the γ-phosphate in the closed, ATP-bound state (as it is in FbpC) and constructed a symmetrical dimer from chain C of the PDB:1Q12 structure.
(B) Side view of MalK for comparison (PDB:1Q12) ( Chen et al., 2003 ).
RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.