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PDB ID Mentions in PubMed Central Article count: 1

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PDB ID Mentions in PubMed Central

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Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database.

(2007) Genome Biol 8

PubMed: 17335583 | PubMedCentral: PMC1868941 | DOI: 10.1186/gb-2007-8-3-r31

The carboxyl-terminal domain, termed the Cu,Zn superoxide dismutase-like domain in the SCOP database, comprised an eight-stranded β-barrel that strongly resembles yeast superoxide dismutase I ... nd human superoxide dismutase I. Table 1 3D-BLAST search results by copper chaperone for superoxide dismutase (PDB code 1JK9-B) from yeast as query PDB code Protein title log( E value) rmsd (Å) Sequence identity (%) a SCOP sccs Species 1EJ8-A Copper chaperone for yeast sod -50.70 1.10 57.6 b.1.8.1 Saccharomyces cerevisiae 1QUP-A Copper chaperone for superoxide dismutase -27.05 0.58 28.3 d.58.17.1 Saccharomyces cerevisiae 1CC8-A Superoxide dismutase 1 copper chaperone -17.40 1.64 8.6 d.58.17.1 Saccharomyces cerevisiae 1TO4-A Superoxide dismutase -17.22 2.78 19.6 b.1.8.1 Schistosoma mansoni 1DO5-A Human copper chaperone for superoxide dismutase domain II -16.30 2.57 17.3 b.1.8.1 Homo sapiens 1OSD-A Oxidized Merp from Ralstonia metallidurans CH34 -16.05 1.61 11.1 d.58.17.1 Ralstonia metallidurans 1Q0E-A Copper, zinc superoxide dismutase -14.22 1.68 17.7 b.1.8.1 Bos taurus 1OAL-A Superoxide dismutase -14.00 2.19 17.7 b.1.8.1 Photobacterium leiognathi 1SRD-A Copper, zinc superoxide dismutase -13.30 2.71 17.5 b.1.8.1 Synthetic construct 1FE0-A Copper transport protein atox1 -13.10 1.40 9.9 d.58.17.1 Homo sapiens 1OZU-A Copper, zinc superoxide dismutase -12.70 2.42 18.5 b.1.8.1 Homo sapiens 1ESO Copper, zinc superoxide dismutase -12.30 2.49 17.6 b.1.8.1 Escherichia coli 1FVQ-A Copper-transporting ATPase -12.00 1.64 9.9 d.58.17.1 Saccharomyces cerevisiae 1JCV Copper, zinc superoxide dismutase -11.70 2.24 20.3 b.1.8.1 Saccharomyces cerevisiae 1S6U-A Copper-transporting ATPase 1 -11.15 1.87 8.6 d.58.17.1 Homo sapiens 1XSO-A Copper, zinc superoxide dismutase -10.70 1.88 19.3 b.1.8.1 Xenopus laevis 1OQ3-A Potential copper-transporting ATPase -10.40 1.84 11.4 d.58.17.1 Bacillus subtilis 1VCA-A Human vascular cell adhesion molecule-1 -10.30 3.76 15.9 b.1.1.3 Homo sapiens 1KQK-A Potential copper-transporting ATPase -10.22 1.63 12.3 d.58.17.1 Bacillus subtilis 1MWY-A The N-terminal domain of ZntA in the apo-form -10.10 1.67 9.0 d.58.17.1 Escherichia coli a Amino acid sequence identity is calculated using FASTA software.

Publication Year: 2007