Citations in PubMed

Primary Citation PubMed: 12941707 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 11

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Conformational flexibility revealed by the crystal structure of a crenarchaeal RadA.

(2005) Nucleic Acids Res 33

PubMed: 15755748 | PubMedCentral: PMC1062875 | DOI: 10.1093/nar/gki288

The subsequent availability of coordinates for Pf RadA [1PZN ( 23 )], which included one copy of the enzyme's N-terminal domain, confirmed that our structural assignment was correct.

Publication Year: 2005

Three new structures of left-handed RADA helical filaments: structural flexibility of N-terminal domain is critical for recombinase activity.

(2009) PLoS One 4

PubMed: 19295907 | PubMedCentral: PMC2654063 | DOI: 10.1371/journal.pone.0004890

Accordingly, a progressive clockwise axial rotation can account for the structural transition from a protein ring (PDB accession code: 1PZN) to a right-handed RadA-AMP-PNP filament with six monomers p... r helical turn (PDB accession code: 1T4G), then to an overextended right-handed filament with three monomers per helical turn (PDB accession code: 2Z43), and, finally, to a left-handed filament with four monomers per helical turn (PDB accession code: 2DFL).

To further illustrate the structural flexibility between the NTD and the CAD, we compared 11 different RadA and Rad51 monomeric structures (i.e., 1PZN, 1T4G, 2Z43, 2DFL, 2ZUB_A, 2ZUC_A, 2ZUD_A, 2ZUB_B, 2ZUC_B, 2ZUD_B and 1SZP) by fixing their PMs and the neighboring α5 helix ( Figure 4 ) and also by comparing their Φ and Ψ angles as described previously [22] ( Table 2 ).

Publication Year: 2009

Functional characterization and identification of mouse Rad51d splice variants.

(2009) BMC Mol Biol 10

PubMed: 19327148 | PubMedCentral: PMC2667185 | DOI: 10.1186/1471-2199-10-27

RAD51D was matched to the RAD51 (RADA) structure from Pyrococcus furiosus (1PZN) and was shown to have 24% identity and 46% similarity.

Publication Year: 2009

Structure of a hexameric form of RadA recombinase from Methanococcus voltae.

(2012) Acta Crystallogr Sect F Struct Biol Cryst Commun 68

PubMed: 22691778 | PubMedCentral: PMC3374503 | DOI: 10.1107/S1744309112010226

Similar assemblies of PfRadA and HsDMC1   Interestingly, the crystal packing of heptameric PfRadA (Shin et al. , 2003 ▶ ; PDB entry 1pzn ) and octameric HsDMC1 (Kinebuchi et al. , 2004... ▶ ; PDB entry 1v5w ) suggests that they both form similar two-ringed assemblies with D 7 and D 8 point-group symmetry (Figs. 2 b ▶ and 2 c ▶ ), respectively.

Publication Year: 2012

Target molecular simulations of RecA family protein filaments.

(2012) Int J Mol Sci 13

PubMed: 22837683 | PubMedCentral: PMC3397515 | DOI: 10.3390/ijms13067138

According to the left-hand RadA protein sequence and the template structures (PDB ID: 1PZN and 1T4G), the closed-ring RadA and MvRadA structures were constructed by the Modeller program [ 32 ].

Publication Year: 2012

Using a fragment-based approach to target protein-protein interactions.

(2013) Chembiochem 14

PubMed: 23344974 | PubMedCentral: PMC3594973 | DOI: 10.1002/cbic.201200521

Figure 1 A) Structural overlay of human RAD51 (red) bound to a BRC4 repeat (cyan; PDB ID: 1N0W) and wild-type monomeric P. furiosus RadA (green, PDB ID: 1PZN).

Publication Year: 2013

Details of ssDNA annealing revealed by an HSV-1 ICP8-ssDNA binary complex.

(2013) Nucleic Acids Res 41

PubMed: 23605044 | PubMedCentral: PMC3675482 | DOI: 10.1093/nar/gkt266

However, when we examined the crystal packing of classical recombinases RecA (3CMT) ( 47 ), PfRad51 (1PZN) ( 48 ) and RadA (3NTU), we observed dimers with a conformation similar to our top–bot... om ICP8 dimers fitted into one symmetrical unit of the density map.

Publication Year: 2013

Archaeal genome guardians give insights into eukaryotic DNA replication and damage response proteins.

(2014) Archaea 2014

PubMed: 24701133 | PubMedCentral: PMC3950489 | DOI: 10.1155/2014/206735

(a) A Rad51 ring model derived from a P. furiosus crystal structure is composed of 7 identical subunits, each colored differently (PDB code 1PZN).

(a) Stereoview of archaeal P. furiosus Rad51 (PDB code 1PZN).

Publication Year: 2014

Determining effects of non-synonymous SNPs on protein-protein interactions using supervised and semi-supervised learning.

(2014) PLoS Comput Biol 10

PubMed: 24784581 | PubMedCentral: PMC4006705 | DOI: 10.1371/journal.pcbi.1003592

Interestingly, all six interactions were mediated by paralogous pairs of domains and thus could be modeled using the same template (PDB ID: 1PZN).

Publication Year: 2014

Nanobiomotors of archaeal DNA repair machineries: current research status and application potential.

(2014) Cell Biosci 4

PubMed: 24995126 | PubMedCentral: PMC4080772 | DOI: 10.1186/2045-3701-4-32

A : Protomer in the ring structure of PfuRadA (PDB: 1PZN), B : Protomer in the right-handed filament of MvRadA (PDB: 1T4G).

Figure 3 Subdomain interactions at the interface of two neighboring ATPase domains in the PfuRadA ring structure (PDB: 1PZN) (A) and in the MvRadA filament structure (PDB: 1T4G) (B).

Publication Year: 2014

PubMed ID is not available.

Published in 2014

PubMedCentral: PMC4333388

The region of the Schellman loop appears to be important in archaeal Rad51 orthologs as well, since the structure of Pyrococcus furiosus RadA protein (PDB ID: 1PZN) ( 44 ) reveals a modified Schellman... loop motif in which a mini-helix containing two Glu residues is separated from α-helix 1 by an extra Pro residue (Figure 1A ).


Publication Year: 2014