Primary Citation PubMed: 8416808
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Pasteurella multocida toxin activates various heterotrimeric G proteins by deamidation.
(2010) Toxins (Basel) 2
PubMed: 22069582 | PubMedCentral: PMC3202810 | DOI: 10.3390/toxins2020205
This image was generated using PyMol and PDB data file 2EBF (PMT), 1HQ0 (CNF1), 1POP (papain) and 1GGT (Factor XIII).
Publication Year: 2010
A highly efficient cocaine-detoxifying enzyme obtained by computational design.
(2014) Nat Commun 5
PubMed: 24643289 | PubMedCentral: PMC3996704 | DOI: 10.1038/ncomms4457
Specifically, computational modeling of the TS1 structures associated with various designs was based on the TS1 geometry determined in our previously reported molecular modeling and reaction coordinat... calculations 32 , 40 , 41 on BChE-catalyzed hydrolysis of (−)-cocaine; the modeling started from the X-ray crystal structure 42 deposited in the Protein Data Bank (pdb code: 1POP), and the reaction coordinate calculation was carried out by using a hybrid quantum mechanical/molecular mechanical (QM/MM) approach in which the QM part was treated at the B3LYP/6-31G* level and the MM part was treated by using Amber force field.
Publication Year: 2014
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