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PDB ID Mentions in PubMed Central Article count: 1

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PDB ID Mentions in PubMed Central

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A conservation and rigidity based method for detecting critical protein residues.

(2013) BMC Struct Biol 13 Suppl 1

PubMed: 24565061 | PubMedCentral: PMC3952096 | DOI: 10.1186/1472-6807-13-S1-S6

residues % Critical by Conservation % Critical by Rigidity % Critical by both methods % Non-critical by both methods % Total match % Critical Only by Conservation % Critical Only by Rigidity 1aho 64 5... .0 25.0 15.6 40.6 56.3 34.4 9.4 1kiv 80 52.5 16.3 13.8 42.5 56.3 38.8 2.5 1r69 63 46.0 6.3 3.2 50.8 54.0 42.9 3.2 1uln 82 41.5 19.5 3.7 42.7 46.3 37.8 15.9 1wvn 74 52.7 8.1 5.4 44.6 50.0 47.3 2.7 2era 62 41.9 29.0 11.3 40.3 51.6 30.6 17.7 3p7k 45 88.9 8.9 8.9 11.1 20.0 80.0 0.0 1b9w 91 64.8 18.7 16.5 33.0 49.5 48.4 2.2 1mul 90 47.8 7.8 4.4 33.3 37.8 43.3 3.3 1f94 63 66.7 30.2 17.5 20.6 38.1 49.2 12.7 1sif 71 56.3 15.5 9.9 38.0 47.9 46.5 5.6 1x3o 80 56.3 10.0 6.3 40.0 46.3 50.0 3.8 2igd 61 55.7 21.3 16.4 39.3 55.7 39.3 4.9 2qt4 95 53.7 5.3 2.1 43.2 45.3 51.6 3.2 3gbl 97 55.7 35.1 24.7 34.0 58.8 30.9 10.3 1cdz 96 52.1 16.7 10.4 41.7 52.1 41.7 6.3 1mzl 93 48.4 4.3 1.1 48.4 49.5 47.3 3.2 1snb 64 53.1 20.3 14.1 40.6 54.7 39.1 6.3 1vcc 77 51.9 13.0 7.8 42.9 50.6 44.2 5.2 2nls 36 63.9 22.2 19.4 33.3 52.8 44.4 2.8 2xkm 46 78.3 6.5 6.5 21.7 28.3 71.7 0.0 3k2t 56 50.0 12.5 10.7 42.9 53.6 39.3 1.8 1t2i 96 55.2 13.5 9.4 40.6 50.0 45.8 4.2 1yp5 58 56.9 17.2 8.6 34.5 43.1 48.3 8.6 2o37 81 56.8 19.8 12.3 35.8 48.1 44.4 7.4 1wkx 43 53.5 27.9 16.3 34.9 51.2 37.2 11.6 1ucs 64 54.7 4.7 1.6 42.2 43.8 53.1 3.1 1hpt 56 41.1 23.2 12.5 48.2 60.7 28.6 10.7 3cqt 58 50.0 29.3 22.4 43.1 65.5 27.6 6.9 1ug4 60 53.3 25.0 13.3 35.0 48.3 40.0 11.7 2ygs 92 59.8 4.3 2.2 38.0 40.2 57.6 2.2 1csp 67 56.7 6.0 6.0 43.3 49.3 50.7 0.0 1jzb 66 50.0 27.3 19.7 42.4 62.1 30.3 7.6 3llb 81 53.1 29.6 18.5 35.8 54.3 34.6 11.1 1ntn 72 44.4 20.8 9.7 43.1 52.8 34.7 11.1 1whp 94 54.3 20.2 16.0 41.5 57.4 38.3 4.3 2b8i 77 51.9 11.7 10.4 46.8 57.1 41.6 1.3 2pcy 99 44.4 12.1 5.1 48.5 53.5 39.4 7.1 2zeq 78 62.8 20.5 16.7 33.3 50.0 46.2 3.8 3lyw 86 31.4 10.5 4.7 60.5 65.1 26.7 5.8 1pft 87 47.1 16.1 5.7 41.4 47.1 41.4 10.3 2pko 99 49.5 12.1 7.1 45.5 52.5 42.4 5.1 The data in Table 1 suggests that conservation analysis identifies significantly more residues as critical than rigidity analysis.

Publication Year: 2013