Primary Citation PubMed: 12869192
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
A medicinal chemist's guide to molecular interactions.
(2010) J Med Chem 53
PubMed: 20345171 | PubMedCentral: PMC2905122 | DOI: 10.1021/jm100112j
We are aware of only a single ligand where the backbone NH has no good counterpart: 4,5,6,7-tetrabromobenzotriazole forms two halogen bonds to the flanking backbone carbonyl groups but no direct inter... ction with the NH group (PDB code 1p5e ).
Publication Year: 2010
Training a scoring function for the alignment of small molecules.
(2010) J Chem Inf Model 50
PubMed: 20831240 | PubMedCentral: PMC2946173 | DOI: 10.1021/ci100227h
( 31 ) If the six ligands 1DI8 , 1P5E , 1PKD , 1PXI , 1PXJ , and 1WCC were excluded, then our results would improve from 39.6% to 47.6% correct for the rigid-body alignments and from 22.4% to 26.6% co... rect for the flexible alignments.
Out of the 57 ligands, only 4 do not have at least 2 out of these 3 features, and ligands 1DI8 , 1P5E , and 1WCC are among them.
Of the 57 ligands in the system, only 7 ligands have more than 33 or less than 17 heavy atoms, and 1P5E , 1PKD , 1PXI , 1PXJ , and 1WCC are among them, with 13, 36, 14, 14, and 8 heavy atoms, respectively.
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics:
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.