Primary Citation PubMed: 12869192
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A medicinal chemist's guide to molecular interactions.
(2010) J Med Chem 53
PubMed: 20345171 | PubMedCentral: PMC2905122 | DOI: 10.1021/jm100112j
We are aware of only a single ligand where the backbone NH has no good counterpart: 4,5,6,7-tetrabromobenzotriazole forms two halogen bonds to the flanking backbone carbonyl groups but no direct inter... ction with the NH group (PDB code 1p5e ).
Publication Year: 2010
Training a scoring function for the alignment of small molecules.
(2010) J Chem Inf Model 50
PubMed: 20831240 | PubMedCentral: PMC2946173 | DOI: 10.1021/ci100227h
( 31 ) If the six ligands 1DI8 , 1P5E , 1PKD , 1PXI , 1PXJ , and 1WCC were excluded, then our results would improve from 39.6% to 47.6% correct for the rigid-body alignments and from 22.4% to 26.6% co... rect for the flexible alignments.
Out of the 57 ligands, only 4 do not have at least 2 out of these 3 features, and ligands 1DI8 , 1P5E , and 1WCC are among them.
Of the 57 ligands in the system, only 7 ligands have more than 33 or less than 17 heavy atoms, and 1P5E , 1PKD , 1PXI , 1PXJ , and 1WCC are among them, with 13, 36, 14, 14, and 8 heavy atoms, respectively.
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