Primary Citation PubMed: 12738864
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Comparative mapping of sequence-based and structure-based protein domains.
(2005) BMC Bioinformatics 6
PubMed: 15790427 | PubMedCentral: PMC1087832 | DOI: 10.1186/1471-2105-6-77
These SCOP domains are found to co-exist in PDB protein chains 1iwG, 1oy8, 1oyE, 1oy6, 1oy9, and 1oyD based on SCOP records.
Publication Year: 2005
A generalized analysis of hydrophobic and loop clusters within globular protein sequences.
(2007) BMC Struct Biol 7
PubMed: 17210072 | PubMedCentral: PMC1774571 | DOI: 10.1186/1472-6807-7-2
Bottom panel Segments of membrane proteins, showing the typical texture associated with transmembrane α-helices ( E.coli acriflavine resistance protein b; pdb 1oy8 (chain a), and transmembrane... β-strands ( S.typhimurium sucrose-specific protein; pdb 1a0s (chain p).
Publication Year: 2007
Multitarget drug discovery for tuberculosis and other infectious diseases.
(2014) J Med Chem 57
PubMed: 24568559 | PubMedCentral: PMC4084622 | DOI: 10.1021/jm500131s
24 Using the Phyre2 program, 25 we find with MmpL3 that 653 residues (69% coverage) are predicted with 100% confidence to have the structure shown in Figure 7 A and with MmpL11, 642 residues (66% cove... age) are predicted with 100% confidence to have the structure shown in Figure 7 B. Both structures are very similar to those found in cation efflux pumps such as CusA (PDB ID 3ko7) and multidrug efflux pumps such as the acriflavin resistance protein B (AcrB; PDB ID 1oy8), although the C-terminus (∼1/3 of the total protein) is not modeled in either MmpL3 or MmpL11.
Publication Year: 2014
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