Primary Citation PubMed: 1942038
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Bomapin is a redox-sensitive nuclear serpin that affects responsiveness of myeloid progenitor cells to growth environment.
(2010) BMC Cell Biol 11
PubMed: 20433722 | PubMedCentral: PMC2874763 | DOI: 10.1186/1471-2121-11-30
In silico models of reduced and oxidized bomapin The model of reduced bomapin was generated from the bomapin sequence (P48595) using the SWISS-MODEL server (version 3.5) [ 29 ] with the coordinates of... PAI-2 (1by7), serpinB1 (1hle), and ovalbumin (1ova) as templates.
Publication Year: 2010
Loss and gain of function in SERPINB11: an example of a gene under selection on standing variation, with implications for host-pathogen interactions.
(2012) PLoS One 7
PubMed: 22393410 | PubMedCentral: PMC3290568 | DOI: 10.1371/journal.pone.0032518
In the modeling, the structures of chicken ovalbumin protein (pdb reference: 1OVA, 1UHG and 1JTI)) and SERPINB3 (pdb reference: 2ZV6) were used Each protein6 showed a sequence identity of approximatel... 37% with SERPINB11.
Publication Year: 2012
Ovalbumin-related protein X is a heparin-binding ov-serpin exhibiting antimicrobial activities.
(2013) J Biol Chem 288
PubMed: 23615912 | PubMedCentral: PMC3682532 | DOI: 10.1074/jbc.M113.469759
The OVAX three-dimensional model was built based on the 1.95 Å resolution structure of chicken uncleaved ovalbumin (Protein Data Bank code 1OVA ) as a specific template.
Three-dimensional Model of OVAX A three-dimensional structure of OVAX was modeled by homology to the x-ray structure of uncleaved ovalbumin (Protein Data Bank code 1OVA ).
Publication Year: 2013
PubMed ID is not available.
Published in 2015
A clear misfit is observed between the experimental scattering obtained in batch mode and the scattering calculated using CRYSOL (Svergun et al. , 1995 ▶ ) from the crystallographic monomer of... the protein [Protein Data Bank (PDB) code 1ova (Stein et al. , 1991 ▶ )], yielding a discrepancy χ 2 = 5.6.
Furthermore, the calculated model intensity from the crystal structure (PDB ID: 1ova ) shows a significant improvement in the fit against the experimental data (χ 2 = 2.02).
Publication Year: 2015
( A ) Comparision of the overallstructure between serpin18 (orange) and human plasminogen activator inhibitor-1 (PDB: 1DB2, blue), ( B ) human plasminogen activator inhibitor-1 complexed with plasmino... en activator (PDB: 3PB1, lightmagenta) and ( C ) Ovalbumin (PDB: 1OVA, green).
( D ) Structure-based multialignment of Bombyx mori serpin18 (NP_001139711.1) and 1DB2, Homo sapiens plasminogen activator inhibitor-1 (NP_000593.1; Identity, 18.8%; RMSD, 4.2 Å); 3PB1, Homo sapiens plasminogen activator inhibitor-1 ((NP_000593.1; Identity, 18.6%; RMSD, 4.6 Å ); 1HP7, Homo sapiens alpha-1-antitrypsin (NP_000286.3; Identity, 21.3%; RMSD, 4.5 Å) and 1OVA, Gallus gallus ovalbumin (NP_001073231.1; Identity, 16.9%; RMSD, 4.3 Å).
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