Citations in PubMed

PubMed ID is not available.

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

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PDB ID Mentions in PubMed Central

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Computer-based screening of functional conformers of proteins.

(2008) PLoS Comput Biol 4

PubMed: 18463705 | PubMedCentral: PMC2265533 | DOI: 10.1371/journal.pcbi.1000009

For the HIV protease, 73 experimentally determined crystal structures were used: 1a30, 1a8g, 1a9m, 1aaq, 1ajv, 1ajx, 1axa, 1bdr, 1bv7, 1bv9, 1bwa, 1bwb, 1cpi, 1dif, 1dmp, 1gnm, 1gnn, 1gno, 1hbv, 1hih,... 1hiv, 1hos, 1hps, 1hpv, 1hpx, 1hsg, 1hte, 1htf, 1htg, 1hvc, 1hvi, 1hvj, 1hvk, 1hvl, 1hvr, 1hvs, 1hwr, 1hxb, 1hxw, 1mer, 1mes, 1met, 1meu, 1mtr, 1odw, 1odx, 1ody, 1ohr, 1pro, 1qbr, 1qbs, 1qbt, 1qbu, 1sbg, 1tcx, 1vij, 1vik, 1ytg, 1yth, 2aid, 2bpv, 2bpw, 2bpx, 2bpy, 2bpz, 2upj, 3aid, 4hvp, 4phv, 5hvp, 7hvp, 8hvp, 9hvp.

Publication Year: 2008


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4404092

a MA: matrix monomer, PDB 2H3F; MA3: matrix trimer, PDB 1HIW; CA: capsid monomer, PDB 3MGE; CA2: capsid dimer, PDB 2M8L; CA5: capsid pentamer, PDB 3P05; CA6: capsid hexamer, PDB 3MGE; NC: nucleocapsid... monomer, PDB 2EXF; PR2: protease dimer, PDB 1ODW.

All-atom distance calculation For pairs of residues in MA, CA, NC, and PR, the smallest all-atom distances were calculated by scanning through PDB files for all possible multimerizations of each protein: MA (monomer PDB 2H3F*, trimer PDB 1HIW), CA (monomer PDB 3MGE, dimer PDB 2M8L*, pentamer PDB 3P05, hexamer PDB 3MGE), NC (monomer PDB 2EXF*), PR (dimer PDB 1ODW).

a MA: matrix monomer, PDB 2H3F; MA3: matrix trimer, PDB 1HIW; CA: capsid monomer, PDB 3MGE; CA2: capsid dimer, PDB 2M8L; CA5: capsid pentamer, PDB 3P05; CA6: capsid hexamer, PDB 3MGE; NC: nucleocapsid monomer, PDB 2EXF; PR2: protease dimer, PDB 1ODW.

Publication Year: 2015