Citations in PubMed

Primary Citation PubMed: 14684898 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Structural analysis of FAD synthetase from Corynebacterium ammoniagenes.

(2008) BMC Microbiol 8

PubMed: 18811972 | PubMedCentral: PMC2573891 | DOI: 10.1186/1471-2180-8-160

PDB SUBSTRATES (%) IDENTITIES (%) CONSERVATIVE SUBSTITUTIONS REFERENCE FAD synthetases T. maritima 1mrz 29.3 40.2 [ 14 ] N-terminal a 30.6 39.2 C-terminal b 27.6 41.5 T. maritima complexed 1s4m RF 29.... 40.2 [ 15 ] 1t6x ADP 1t6y FMN, ADP, AMP Nucleotydyltransferases a GCT B. subtilis 1coz CTP 12.4 23.1 [ 30 ] NMNAT M. jannaschii 1f9a Mg 2+ , ATP 12.9 22.0 [ 32 ] NMNAT H. sapiens 1kku 10.8 18.3 [ 31 ] NMNAT M. thermoautotropicum 1ej2 NAD + , Na + 13.0 22.6 [ 33 ] PPAT E. coli 1b6t dPCoA 13.0 26.3 [ 34 ] 1gn8 ATP, Mn 2+ [ 37 ] PPAT T. thermophilus 1od6 Ppant 11.3 22.0 [ 35 ] Riboflavinkinases b H. sapiens 1p4m ADP, Mg 2+ , FMN 25.7 41.4 [ 21 ] 1q9s ADP, Mg 2+ , FMN [ 22 ] 1nb0 ADP, Mg 2+ [ 21 ] S. pombe 1n06 ADP [ 23 ] 1n07 FMN, ADP 23 38.2 1n08 Zn 2+ , ADP Parameters derived from the structure-based sequence alignment of the produced Ca FADS models over structural databases.

Publication Year: 2008


FLORA: a novel method to predict protein function from structure in diverse superfamilies.

(2009) PLoS Comput Biol 5

PubMed: 19714201 | PubMedCentral: PMC2721411 | DOI: 10.1371/journal.pcbi.1000485

Thermophilus pantetheine phosphate adenylyltransferase PDB: 1od6), is a relatively small protein and consists of a homo-hexamer of single HUP domain subunits.

Publication Year: 2009


Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis.

(2010) Biol Direct 5

PubMed: 20678224 | PubMedCentral: PMC2922099 | DOI: 10.1186/1745-6150-5-48

This search recovered catalytic domains of the class-I AAtRSs, namely tyrosyl-tRS (PDB: 2cyc ; p = 7 × 10 -6 ) and tryptophanyl-tRS (PDB: 3foc ; p = 4 × 10 -5 ) and the HIGH-motif nucl... otidyltransferase, phosphopantetheine adenylyltransferase (1od6; p = 3 × 10 -4 ) as the best hits.

Publication Year: 2010


Structures of phosphopantetheine adenylyltransferase from Burkholderia pseudomallei.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67

PubMed: 21904046 | PubMedCentral: PMC3169398 | DOI: 10.1107/S1744309111004349

The first PPAT crystal structures were solved from Escherichia coli (PDB entries 1qjc , 1gn8 , 1h1t and 1b6t ; Izard, 2002 ▶ , 2003 ▶ ; Izard & Geerlof, 1999 ▶ ; Izard ... t al. , 1999 ▶ ) and were followed by a number of other PPAT crystal structures from Archaeoglobus fulgidus (PDB entry 3do8 ; R. Zhang, R. Wu, R. Jedrzejczak & A. Joachimiak, unpublished work), Bacillus subtilis (PDB entry 1o6b ; Badger et al. , 2005 ▶ ), Mycobacterium tuberculosis (PDB entry 1tfu ; Morris & Izard, 2004 ▶ ), Thermotoga maritima (PDB entry 1vlh ; Joint Center for Structural Genomics, unpublished work), Thermus thermophilus (PDB entry 1od6 ; Takahashi et al. , 2004 ▶ ), Staphylococcus aureus (PDB entry 3f3m ; Lee et al. , 2009 ▶ ) and Yersinia pestis (PDB entries 3l92 and 3l93 ; J. Osipiuk, N. Maltseva, M. Makowska-grzyska, K. Kwon, W. F. Anderson & A. Joachimiak, unpublished work).

On the whole, these structures include apo enzymes (PDB entries 3l93 , 3do8 and 1tfu ), a variety of substrate-bound states ( e.g. 4′-phosphopantetheine in PDB entries 1od6 and 1qjc and ATP in PDB entry 1gn8 ) and product states (dephospho-coenzyme A), as well as non-native states ( e.g. ADP, coenzyme A).

Sequences are shown from B. pseudomallei ( Bp PPAT; PDB entry 3pxu ; present study), E. coli (PDB entry 1b6t ; Izard & Geerlof, 1999 ▶ ), Y. pestis (PDB entry 3l93 ; Osipiuk et al. , unpublished work), T. maritima (PDB entry 1vlh ; Joint Center for Structural Genomics, unpublished work), M. tuberculosis (PDB entry 1tfu ; Morris & Izard, 2004 ▶ ), B. subtilis (PDB entry 1o6b ; Badger et al. , 2005 ▶ ) and T. thermophilus (PDB entry 1od6 ; Takahashi et al. , 2004 ▶ ).

Publication Year: 2011