Primary Citation PubMed: 12746495
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Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly.
(2011) PLoS Biol 9
PubMed: 21468301 | PubMedCentral: PMC3066130 | DOI: 10.1371/journal.pbio.1000603
Docking was also completed using each of the complete 12-subunit pol II structures found in the RCSB Protein Data Bank (1NT9, 1PQV, 1WCM, 1Y1W, 1Y1Y, 1Y77, 2B8K, 2B63, 2JA5, 2JA6, 2JA7, 2JA8, 2VUM, 3F... I, 3HOU, 3HOV, 3HOW, 3HOX, 3HOY, 3HOZ, 3K1F), with identical results.
Third, identical pol II docking results were calculated from over 20 different pol II crystal structures (e.g. PDB 1Y1V, 1NT9, etc.).
Publication Year: 2011
A nexus for gene expression-molecular mechanisms of Spt5 and NusG in the three domains of life.
(2012) J Mol Biol 417
PubMed: 22306403 | PubMedCentral: PMC3382729 | DOI: 10.1016/j.jmb.2012.01.031
The RNA interacts with the RNAP stalk (Rpo4/7 or RPB4/7) during transcription elongation, but the RNA species included in the X-ray structure (PDB ID 1NT9 ) was too short to observe this interaction.
Representative RNAP structures are shown in top views (a, c, and e) and in front views (b, d, and f): bacterial [a and b; Protein Data Bank (PDB) ID 1I6V ], archaeal (c and d; PDB ID 2WAQ ), and eukaryotic (e and f; PDB ID 1NT9 ) RNAPs.
Publication Year: 2012
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