Citations in PubMed

Primary Citation PubMed: 12758141 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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ResBoost: characterizing and predicting catalytic residues in enzymes.

(2009) BMC Bioinformatics 10

PubMed: 19558703 | PubMedCentral: PMC2713229 | DOI: 10.1186/1471-2105-10-197

In summary, the PDB ID's for the proteins (and their included chain) are: 1qdl-A , 1b8g-B , 1fps , 1mfp-A , 1arz-A , 1d3g-A , 1qb4-A , 1kas , 1a7u-A , 1dii-A , 1grc-A , 1uag , 1zio , 1ay4-A , 1bou-B ,... 1b73-A , 1q91-A , 1daa-A , 1cd5-A , 1aq0-A , 1fdy-A , 1ecx-A , 1qba , 1kc7-A , 1pja-A , 1hdh-A , 1geq-B , 1exp , 1aql-A , 1b66-A , 1qum-A , 1d7r-A , 1qd6-C , 1cz1-A , 5enl , 1ah7 , 1pmi , 1og1-A , 1tph-1 , 1ey2-A , 1ahj-A , 1pnl-B , 1ir3-A , 1oe8-B , 1d0s-A , 1gim , 1std , 1a0i , 1aop , 1qcn-B , 1get-B , 1uqt-A , 1m6k-A , 1trk-A , 1sme-A , 2ts1 , 1ps9-A , 1ecl , 1ef0-A , 1aj0 , 2dhn , 1akd , 7odc-A , 135l , 1fcb-A , 1cbg , 1f8m-A , 1aj8-A , 1cel-A , 1l8t-A , 1jms-A , 1mrq-A , 1qh9-A , 1mlv-B , 1mhl-D , 1f75-A , 1d6o-A , 1b57-A , 1chd , 1bwz-A , 1nln-A , 1nba-A , 1cmx-A , 1xik-B , 1lnh , 1opm-A , 1lxa , 1a50-B , 1yve-L , 1d2r-A , 1bt1-A , 1ab8-A , 1dbt-A , 1amo-A , 1p4r-A , 1eyp-A , 1do8-A , 1oyg-A , 1rbn , and 1qmh-B .

Publication Year: 2009


Rosetta FlexPepDock ab-initio: simultaneous folding, docking and refinement of peptides onto their receptors.

(2011) PLoS One 6

PubMed: 21572516 | PubMedCentral: PMC3084719 | DOI: 10.1371/journal.pone.0018934

(A) Bound PDB id Sec str Start backbone-RMSD ∫ Start ϕ/ψ RMSD ∫ Best backbone- iRMSD † Top-10 backbone-iRMSD ‡ Rank of first near-native cluster Hexamer... all-atom top-10 * 1NVR a β + C 1.2 Å 23° 0.2 Å 0.5 Å 1 0.9 Å b 2FMF c A 16.1 Å 131° 0.4 Å 0.5 Å 7 0.6 Å 2O9V c C 5.5 Å 49° 0.4 Å 0.6 Å 1 0.4 Å 2P1K β + C 6.1 Å 61° 0.5 Å 0.6 Å 1 0.6 Å 1RXZ β + C 8.9 Å 80° 0.7 Å 0.7 Å 1 0.9 Å 2R7G α + C 11.2 Å 106° 0.8 Å 0.8 Å 7 1.1 Å 1AWR C 5.3 Å 57° 0.8 Å 0.9 Å 1 1.6 Å 2FNT C 1.4 Å 47° 0.4 Å 1.0 Å 1 2.0 Å 3D1E C 1.6 Å 67° 0.7 Å 1.1 Å 1 1.3 Å 2B1Z A 8.9 Å 124° 0.4 Å 1.2 Å 1 2.2 Å 1T7R A 13.4 Å 128° 0.7 Å 1.2 Å 3 0.8 Å 1N7F c β + C 3.8 Å 52° 0.3 Å 1.4 Å 1 0.8 Å 1ER8 C 6.0 Å 52° 0.8 Å 1.4 Å 1 1.9 Å 1W9E β + C 1.2 Å 39° 0.5 Å 1.5 Å 1 2.7 Å b 2VJ0 C 5.3 Å 72° 1.2 Å 1.5 Å 1 1.4 Å 1Z9O C 6.9 Å 56° 1.6 Å 1.6 Å 2 1.4 Å 2P54 α + C 13.0 Å 120° 0.8 Å 1.8 Å 2 2.2 Å 1NLN β + C 11.7 Å 27° 0.7 Å 2.0 Å 5 1.7 Å 2A3I c α + C 17.3 Å 115° 0.7 Å 2.1 Å 314 2.2 Å 1SSH C 8.4 Å 50° 0.9 Å 3.1 Å 51 2.7 Å 2J6F C 7.4 Å 44° 1.7 Å 5.7 Å >500 7.2 Å 1KL3 α + C 9.4 Å 93° 0.9 Å 5.8 Å >500 6.5 Å 1TW6 C 3.3 Å 46° 1.8 Å 5.9 Å >500 6.5 Å 2C3I C 13.0 Å 70° 1.5 Å 6.0 Å 308 4.7 Å 2FGR c C 7.3 Å 79° 1.3 Å 8.6 Å >500 8.6 Å 1QKZ C 13.51Å 78° 3.1 Å 8.8 Å None 4.5 Å Performance of peptide modeling onto Bound (A) and Unbound (B) protein receptor structures.

Publication Year: 2011