Primary Citation PubMed: 12740607
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Antibody-protein interactions: benchmark datasets and prediction tools evaluation.
(2007) BMC Struct Biol 7
PubMed: 17910770 | PubMedCentral: PMC2174481 | DOI: 10.1186/1472-6807-7-64
Some epitopes, for example, HyHEL-8 on HEL [PDB:1NDG] and 8–18C5 on myelin oligodendrocyte glycoprotein [PDB:1PKQ], were predicted by all methods except CEP (Table 2 ).
Publication Year: 2007
Prediction of antigenic epitopes on protein surfaces by consensus scoring.
(2009) BMC Bioinformatics 10
PubMed: 19772615 | PubMedCentral: PMC2761409 | DOI: 10.1186/1471-2105-10-302
Methods Protein datasets Protein Dataset 1 48 antigen-antibody complexes with resolution <3.0 Å were selected from the 59 representative antigen-antibody complexes compiled by Ponomare... ko and Bourne[ 25 ]: 2ADF , 1FE8 , 1BGX , 1E6J , 1EGJ , 1FSK , 1H0D , 1IQD , 1JRH , 1LK3 , 1MHP , 1NL0 , 1NSN , 1OAZ , 1ORS , 1PKQ , 1RJL , 1SY6 , 1TZI , 1WEJ , 1YJD , 1YY9 , 1ZTX , 2JEL , 1A14 , 1NCA , 1BVK , 1JHL , 1NDG , 1P2C , 1JPS , 1AR1 , 1EO8 , 1QFU , 1EZV , 1OSP , 1FJ1 , 1FNS , 1G9M , 1R3J , 1N8Z , 1NFD , 1TQB , 2VDL , 1V7M , 1XIW , 2AEP , and 1R0A .
Publication Year: 2009
Structure of allergens and structure based epitope predictions.
(2014) Methods 66
PubMed: 23891546 | PubMedCentral: PMC3969231 | DOI: 10.1016/j.ymeth.2013.07.024
For the following discussion the structures PDB: 1NDG  and PDB: 3RVW  were chosen as HEL-Ab and Der p 1-Ab representatives, respectively.
PDB codes are HEL (hen egg-white lysozyme): 1NDG, Bet v 1: 1FSK, Api m 2 (bee venom hyaluronidase): 2J88, BLG (β-lactoglobulin): 2R56, Bla g 2: 2NR6, Phl p 2: 2VXQ, Der f 1: 3RVV.
Publication Year: 2014
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