Primary Citation PubMed: 14532111
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Orientation and structure of the Ndc80 complex on the microtubule lattice.
(2008) J Cell Biol 182
PubMed: 18794333 | PubMedCentral: PMC2542468 | DOI: 10.1083/jcb.200804170
To verify the positioning of kinesin versus the Ncd80/Nuf2 dimer, we overlapped a model of the crystal structure of Ncd-600k (PDB 1N6M) bound to the tubulin dimer (PDB 1TUB) as described previously by... Endres et al. (2006) with our Ncd80/Nuf2 map ( Fig. 4 A , red dashed line).
Publication Year: 2008
A kinesin motor in a force-producing conformation.
(2010) BMC Struct Biol 10
PubMed: 20602775 | PubMedCentral: PMC2906495 | DOI: 10.1186/1472-6807-10-19
Diffraction data were indexed with XDS [ 36 ], solved using CNS v1.2 [ 37 , 38 ] by molecular replacement using PDB 1N6M [ 13 ] as a search model, and refined with CNS v1.2.
Comparison of the P-loop and flanking residues (I430-T443) of NcdT436S with NcdN600K (PDB 1N6M ) [ 13 ] and wild-type Ncd (PDB 2NCD , PDB 1CZ7 ) [ 2 , 17 ] shows that the NcdT436S chains superimpose with the other two models.
Publication Year: 2010
Kinesin-14: the roots of reversal.
(2010) BMC Biol 8
PubMed: 20731883 | PubMedCentral: PMC2922096 | DOI: 10.1186/1741-7007-8-107
(b) In a dimer formed of mutant Ncd subunits (N600K, PDB 1N6M ), one head is rotated relative to the other by about 70°.
Neck-motor interactions trigger rotation of the kinesin stalk.
(2012) Sci Rep 2
PubMed: 22355749 | PubMedCentral: PMC3266953 | DOI: 10.1038/srep00236
The position of S550 in NcdG347D head H2 is close to that in NcdN600K head H2 (PDB 1N6M; Fig. 6B ).
The structure was solved by molecular replacement using a previous stalk-rotated Ncd crystal structure as a search model (PDB 1N6M).
Publication Year: 2012
Kar3Vik1, a member of the kinesin-14 superfamily, shows a novel kinesin microtubule binding pattern.
(2012) J Cell Biol 197
PubMed: 22734002 | PubMedCentral: PMC3384419 | DOI: 10.1083/jcb.201201132
3L1C and 1N6M ; Yun et al., 2003 ; Heuston et al., 2010 ).
1N6M ) gives an RMSD of 2.6 Å for 492 structurally equivalent α-carbons that extend across both heads of Ncd and Kar3Vik1.
1N6M and 3L1C ; Yun et al., 2003 ; Heuston et al., 2010 ).
Altered nucleotide-microtubule coupling and increased mechanical output by a kinesin mutant.
(2012) PLoS One 7
PubMed: 23077560 | PubMedCentral: PMC3473065 | DOI: 10.1371/journal.pone.0047148
NcdY485K is depicted in a tight microtubule-binding, stalk-rotated conformation like NcdN600K (PDB 1N6M) throughout the cycle  ; however, the stalk must rotate back to a pre-stroke conformation at... least transiently during the cycle for the motor to produce force and support microtubule gliding in motility assays.
The origin of minus-end directionality and mechanochemistry of Ncd motors.
(2012) PLoS Comput Biol 8
PubMed: 23166486 | PubMedCentral: PMC3499263 | DOI: 10.1371/journal.pcbi.1002783
ADP-ADP state To simulate the Ncd dimer in solution we used the topological information from the crystal structures with PDB code of 1CZ7 (symmetric state) and 1N6M (asymmetric state).
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