Citations in PubMed

Primary Citation PubMed: 12464183 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Protein interactions from complexes: a structural perspective.

(2007) Comp Funct Genomics

PubMed: 17538689 | PubMedCentral: PMC1838958 | DOI: 10.1155/2007/49356

Structure Description Chains STP SFP SFN MTP MFP MFN Score spoke Score matrix 1iru 20S proteasome 12 26 40 0 26 40 0 −14 −14 1k8a Large ribosomal subunit 12 0 0 3 5 61 0 −3 &#x... 2212;56 1y1v RNA polymerase II-TFIIs 12 15 32 3 18 48 0 −20 −30 1n32 Small ribosomal subunit 9 1 14 1 3 33 0 −14 −30 1sxj RFC bound to PCNA 5 6 4 0 6 4 0 2 2 1u2v ARP2/3 5 4 2 1 6 4 0 1 2 1id3 Nucleasome 4 2 0 3 5 1 0 −1 4 1gw5 AP2 3 3 0 0 3 0 0 3 3 1kyo Cytochrome BC1 3 1 0 1 2 1 0 0 1 1ntk Cytochrome BC1 3 0 0 1 1 1 0 −1 −1 1qo1 ATP synthase motor 3 1 0 2 3 0 0 −1 3

Publication Year: 2007


Knowledge-based instantiation of full atomic detail into coarse-grain RNA 3D structural models.

(2009) Bioinformatics 25

PubMed: 19812110 | PubMedCentral: PMC2788923 | DOI: 10.1093/bioinformatics/btp576

In this article, we use the Thermus thermophilus 16S ribosomal RNA solved at 3.00 Å resolution (PDB ID 1N32 chain A) as the primary database of full atomic structure.

It took 95 s to load the reference database [ Thermus thermophilus 16S ribosomal RNA solved at 3.00 Å resolution (PDB ID 1N32 chain A)].

Publication Year: 2009


A structural basis for streptomycin-induced misreading of the genetic code.

(2013) Nat Commun 4

PubMed: 23322043 | PubMedCentral: PMC3552334 | DOI: 10.1038/ncomms2346

Figure 4 Conformational flexibility in the 30S decoding site a. Comparison of decoding interactions for near-cognate ASL GAG Leu 2 (data set Leu, PDB accession code 4DR6, colored as before) with cogna... e decoding interactions (PDB accession code 1IBM colored in grey 9 ) b. Data set Leu colored as before compared to PDB accession code 1N32 (30S subunit in complex with near-cognate ASL GAG Leu 2 , mRNA, and paromomycin, colored in grey 13 ).

A superposition of our streptomycin/ASL/mRNA-bound 30S subunit structure in the open conformation with the same near-cognate ASL GAG Leu 2 in the paromomycin-stabilized closed conformation (PDB entry 1N32 13 ) shows conformational shifts of A1492/A1493, ASL, and of the mRNA to accommodate the first base mismatch ( Fig. 4b ).

Publication Year: 2013