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PDB ID Mentions in PubMed Central

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Non-homologous isofunctional enzymes: a systematic analysis of alternative solutions in enzyme evolution.

(2010) Biol Direct 5

PubMed: 20433725 | PubMedCentral: PMC2876114 | DOI: 10.1186/1745-6150-5-31

Table 2 Enzymes with multiple structurally distinct, non-homologous isoforms Enzyme name (EC) Example (SwissProt) Structure (PDB) Fold names in SCOP (abbreviated) Acid phosphatase (EC PPA6_HU... AN 1NDH Phosphoglycerate mutase-like APHA_ECOLI 1N8N HAD-like PPA_ZYMMO 1D2T Acid phosphatases PPA5_HUMAN 1UTE Metallo-dependent phosphatases PPAC_HUMAN 5PNT Phosphotyrosine protein phosphatases I PHOA_PENCH n/a n/a Cellulase (EC GUNA_CLOCE 1EDG TIM beta/alpha-barrel GUNA_PSEFL 1UT9 Alpha/alpha toroid GUN1_STRHA 2BOD 7-Stranded beta/alpha barrel GUN_ASPAC 1KS4 Concanavalin A-like lectins/glucanases, GUNM_CLOTM 2FVG Phosphorylase/hydrolase-like GUNE_RUMFL 1L0H Predicted acyl carrier protein-like Superoxide dismutase (EC SODF_ECOLI 1ISA Fe,Mn superoxide dismutase (SOD) SODC_ECOLI 1ESO Immunoglobulin-like beta-sandwich SODN_STRSO 1Q0D Four-helical up-and-down bundle NEC1_NICLS 2ET7 Double-stranded beta-helix Phosphoprotein (Ser) phosphatase (EC PRP1_ECOLI 1G5B Metallo-dependent phosphatases PRPC_BACSU 1TXO PP2C-like CTDS1_HUMAN 1TA0 HAD-like DUS19_HUMAN 1M3G Phosphotyrosine protein phosphatases II Protein-tyrosine phosphatase (EC PTPA_STRCO 1U2P Phosphotyrosine protein phosphatases I-like PTPRD_HUMAN 2FH7 Phosphotyrosine protein phosphatases II MPIP3_HUMAN 1QB0 Rhodanese/Cell cycle control phosphatase YWQE_BACSU 2ANU Predicted 7-stranded beta/alpha barrel EYA3_MOUSE 1JUD Predicted HAD-like DNA-(apurinic or apyrimidinic site) lyase (EC END3_ECOLI 2ABK DNA-glycosylase APEX1_HUMAN 1E9N DNase I-like APN1_YEAST 1QTW TIM beta/alpha-barrel FPG_ECOLI 1K82 MutM-like DNA repair proteins Adenylate cyclase (EC CYA1_HUMAN 1CS4 P-loop NTPases O69199_AERHY 2ACA CYTH-like phosphatases CYAA_BORPE 1YRU EF Hand-like CYAA_ECOLI n/a n/a Inorganic pyrophosphatase (EC IPYR_ARATH 1TWL OB-fold PPAC_BACSU 1WPM DHH phosphoesterases PPAX_BACSU 2HDO HAD-like AVP1_ARATH n/a Integral membrane protein, H + -transporting Catalase (EC CATA_HUMAN 1QQW Heme-dependent catalase-like CATA_ECOLI 2FXG Heme-dependent peroxidases MCAT_LACPL 1JKU Ferritin-like Peroxidase (EC PRDX6_MOUSE 1PRX Thioredoxin fold PERM_HUMAN 1MYP Heme-dependent peroxidases YCDB_ECOLI 2d3q Ferredoxin-like Chloride peroxidase (EC PRXC_PSEPY 1A88 Alpha/beta-hydrolases PRXC_CURIN 1VNC Acid phosphatase PRXC_CALFU 2CPO EF Hand-lik Peroxiredoxin (EC TDXH_AERPE 2E2G Thioredoxin fold AHPD_MYCTU 1KNC AhpD-like OSMC_ECOLI 1NYE OsmC-like Licheninase (EC GUB_NICPL 2CYG TIM beta/alpha-barrel GUB_BACSU 1GBG Concanavalin A-like lectins/glucanases, GUB_BACCI 1V5C Alpha/alpha toroid Figure 3 Distribution of non-homologous isofunctional enzymes by COG functional categories .

Publication Year: 2010