Citations in PubMed

Primary Citation PubMed: 7498454 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

A method to enhance the hit ratio by a combination of structure-based drug screening and ligand-based screening.

(2008) Adv Appl Bioinform Chem 1

PubMed: 21918604 | PubMedCentral: PMC3169939 | DOI: null

Appendix B The protein databank (PDB) identifier list of the basic protein set is: 1a28, 1a42, 1a4g, 1a4q, 1abe1, 1abe2, 1abf1, 1abf2, 1aco, 1ai5, 1aoe, 1apt, 1apu, 1aqw, 1atl, 1b58, 1b9v, 1bma, 1byb,... 1byg, 1c1e, 1c5c, 1c83, 1cbs, 1cbx, 1cdg, 1ckp, 1com, 1coy, 1cps, 1cvu, 1d0l, 1d3h, 1dd7, 1dg5, 1dhf, 1dog, 1dr1, 1ebg, 1eed, 1ejn, 1epb, 1epo, 1ets, 1f0r, 1f0s, 1f3d, 1fen, 1fkg, 1fki, 1fl3, 1glp, 1hdc, 1hfc, 1hos, 1hpv, 1hsb, 1hsl, 1htf1, 1htf2, 1hyt, 1ida, 1ivb, 1jap, 1lah, 1lcp, 1lic, 1lna, 1lst, 1mdr, 1mld, 1mmq, 1mrg, 1mts, 1mup, 1nco, 1ngp, 1nis, 1okl, 1pbd, 1phd, 1phg, 1poc, 1ppc, 1pph, 1pso, 1qbr, 1qbu, 1qpq, 1rds, 1rne, 1rnt, 1rob, 1snc, 1srj, 1tlp, 1tmn, 1tng, 1tnh, 1tni, 1tnl, 1tyl, 1xid, 1xie, 1yee, 2aad, 2ack, 2ada, 2cht, 2cmd, 2cpp, 2ctc, 2fox, 2gbp, 2ifb, 2pk4, 2qwk, 2tmn, 3cla, 3cpa, 3erd, 3ert, 3tpi, 4lbd, 4phv, 5abp1, 5abp2, 5cpp, 5er1, 6rnt, and 7tim.

Publication Year: 2008


PubMed ID is not available.

Published in 2014

PubMedCentral: PMC4170817

56 , 63 − 65 Table 1 RMSDs of Docking Poses Generated by CHARMMing’s Fragment-Based Docking Protocol and Glide SP and success Rates (defined by the percentage of the ligands whose repo... ted RMSD is below 2.0 Å) a PDB ID resolution (Å) best RMSD (Å) Glide SP RMSD (Å) 1A4Q 1.90 2.61 3.30 1A6W 2.00 1.01 6.72 1AOE 1.60 3.13 1.80 1AQW 1.80 1.88 0.96 1ATL 1.80 1.68 1.09 1BMA 1.80 2.76 1.55 1D3H 1.80 0.99 0.81 1FCZ 1.38 1.06 0.31 1GLQ 1.80 4.71 1.01 1HFC 1.50 2.63 2.36 1HVR 1.80 3.84 0.75 1JAP 1.82 1.41 0.92 1KE5 2.20 1.07 1.75 1MLD 1.83 1.29 1.07 1MMQ 1.90 0.50 0.30 1MTS 1.90 1.96 0.54 1MVC 1.90 0.29 0.94 1NHZ 2.30 0.78 1.89 1NQ7 1.50 0.94 1.26 1QBR 1.80 9.31 0.98 1SRJ 1.80 1.33 0.51 1TXI 1.90 1.66 1.64 3ERT 1.90 0.71 1.59 4DFR 1.70 1.66 10.48 Success Rate: 71% 84% a “Best RMSD” refers to the pose closest to the crystal structure.

Publication Year: 2014