Primary Citation PubMed: 8293469
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The structure and function of small nucleolar ribonucleoproteins.
(2007) Nucleic Acids Res 35
PubMed: 17284456 | PubMedCentral: PMC1865073 | DOI: 10.1093/nar/gkl1172
Crystal structure of ( A ) the archaeal fibrillarin (1FBN) and ( B ) of the double-stranded DNA methyltransferase HhaI (1MHT).
Publication Year: 2007
Zinc finger nucleases as tools to understand and treat human diseases.
(2010) BMC Med 8
PubMed: 20594338 | PubMedCentral: PMC2904710 | DOI: 10.1186/1741-7015-8-42
Shown are the structures of the VP16 transactivation domain from the complex with PC4 (2PHE), the Kruppel associated box domain (1V65), the histone H3K9 methyl transferase Suv39H1 (2R3A), HhaI DNA met... yl transferase (1MHT) and FokI endonuclease (1FOK).
Publication Year: 2010
Classification of pseudo pairs between nucleotide bases and amino acids by analysis of nucleotide-protein complexes.
(2011) Nucleic Acids Res 39
PubMed: 21737431 | PubMedCentral: PMC3201857 | DOI: 10.1093/nar/gkr452
In the C-Glu pseudo pairs observed in DNA–protein complexes (PDB-ID = 1dct, 1mht, 4mht), Cytosine modified at position C5 is indicated by an asterisk.
Publication Year: 2011
Structure analysis of Entamoeba histolytica DNMT2 (EhMeth).
(2012) PLoS One 7
PubMed: 22737219 | PubMedCentral: PMC3380923 | DOI: 10.1371/journal.pone.0038728
To compare the conformation of the active site loop with similar 5-cytosine methyltransferases, EhMeth was superposed with the structure of M. Hha I in the closed conformation (PDB-ID: 1MHT) and M. Hh... I in the open conformation (PDB-ID: 1HMY)  .
However, since EhMeth and the structure of M. Hha I (PDB-ID: 1MHT) can be superposed with an r.m.s.d of 1.6 Å among the C α -atoms ( Table 2 ), the superposition yields a convincing model of the EhMeth-DNA complex ( Figure 3b ).
Additionally, electrophoretic mobility shift assays were conducted employing the identical DNA substrate as used for co-crystallization of M. Hha I (PDB-ID: 1MHT).
organism PDB-ID sequence identity (%) r.m.s.d. (Å) (number of matched residues) Entamoeba histolytica EhMeth (this study) 3QV2 100 0 Homo sapiens DNMT2 1G55 27.6 1.03 (260) Haemophilus haemolyticus M. Hha I (closed conformation) 1MHT 20.5 1.66 (237) Haemophilus haemolyticus M. Hha I (open conformation) 1HMY 20.5 1.59 (224) Two α-helices connected by a loop form the hinge region that link the large domain to one end of the small domain ( Figure S1 and S3 ).
The Protein Data Bank accession numbers for the proteins discussed in the paper are as follow: DNMT2 (1G55), M. Hha I (1MHT and 1HMY).
Publication Year: 2012
Mutations in the DNA methyltransferase gene DNMT3A cause an overgrowth syndrome with intellectual disability.
(2014) Nat Genet 46
PubMed: 24614070 | PubMedCentral: PMC3981653 | DOI: 10.1038/ng.2917
The bound DNA was positioned by superposing the crystal structure of bacterial cytosine methyltransferase HhaI in complex with DNA (PDB 1MHT).
Publication Year: 2014
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