Citations in PubMed

Primary Citation PubMed: 7463482 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Positively selected sites in cetacean myoglobins contribute to protein stability.

(2013) PLoS Comput Biol 9

PubMed: 23505347 | PubMedCentral: PMC3591298 | DOI: 10.1371/journal.pcbi.1002929

The FoldX results (last two columns) are reported using two PDB structures: 1MBO and 1U7S.

Publication Year: 2013


Unfolding simulations of holomyoglobin from four mammals: identification of intermediates and ?-sheet formation from partially unfolded states.

(2013) PLoS One 8

PubMed: 24386077 | PubMedCentral: PMC3873898 | DOI: 10.1371/journal.pone.0080308

Correspondingly, the radius of gyration ( R g ) was ∼1.51 nm for sperm whale and seal Mb and ∼1.48 and 1.50 nm for pig and horse Mb, averaged from 30–35 ns, in good agreement w... th the value of 1.52 nm from the average of R g for crystal structures of sperm whale and seal Mbs (PDB IDs: 1A6M [87] , 1MBO [88] , 1U7S [66] , 1U7R [66] , and 1MBS [90] ).

Calculated SASA and radius of gyration ( R g ) from crystal structures were based on averages of the structures 1A6M [87] , 1MBO [88] , 1U7S [66] , and 1U7R [66] for HoloMb.

State Conditions [θ] 222 (deg cm 2 dM −1 ) f H (%) SASA (nm 2 ) R g (nm) HoloN pH 7 −23,000 [9] ; −25,000 [10] 78 a 80.26 a 1.52 a (X-RAY); 1.8±0.2 [32] , [33] (SAXS) ApoN pH 7 −19,000±1000 [21] 53 [86] — 1.9±0.2 [34] (SAXS) ApoI pH 4, 0M Urea −12,000±1000 [21] <0.41 b — 2.3±0.2 [34] (SAXS) ApoU pH 5, 4.5M Urea −3000±1000 [21] ∼0 — 3.4±0.2 [34] (SAXS) a For HoloMb, average based on crystal structures 1A6M [84] , 1MBO [85] , 1U7S [65] , and 1U7R [65] .

Publication Year: 2013


PubMed ID is not available.

Published in 2014

PubMedCentral: PMC4203366

Table 3 Hydrogen Bond Distances in Different Forms of Mb and DHP crystal (PDB) distance (Å) crystal (PDB) distance (Å) Met-Mb (1a6k) 2.67 Met-DHP (2qfk) 3.14/3.24 Oxy-Mb (1mbo) 2.77 Ox... -DHP (2qfn) 2.82/2.84 CO-Mb (1dwr) 3.07 CO-DHP 3.52/>10.0 Use of DFT Calculations To Estimate the Energy of Hydrogen Bonding DFT calculations were used to understand the effect of the internal and external conformations on the tautomeric state of H55.

Publication Year: 2014


The influence of selection for protein stability on dN/dS estimations.

(2014) Genome Biol Evol 6

PubMed: 25355808 | PubMedCentral: PMC4224349 | DOI: 10.1093/gbe/evu223

( C ) Posterior probabilities of per site d N /d S from M8 model (Materials and Methods) across the sequence and ( D ) mapped onto the crystal structure of sperm whale Mb (PDB code = 1MBO) ( Phillips ... 980 ).

Estimating the Effect of Point Mutations on Protein Folding Stability We used the structure of sperm whale Mb (PDB code = 1MBO) ( Phillips 1980 ) as our model protein.

To calculate the Δ G mutant , we replaced the amino acid in the PDB 1MBO and repacked and optimized the side-chains to within 10Å of the site being mutated.

Publication Year: 2014


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4451517

We transferred the coordinates of the oxygen molecule from the sperm whale oxy-Mb (PDB ID: 1MBO) [ 27 ] and constructed the horse oxy-Mb model.

Publication Year: 2015