Citations in PubMed

PubMed ID is not available.

PDB ID Mentions in PubMed Central Article count: 6

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Protein functional surfaces: global shape matching and local spatial alignments of ligand binding sites.

(2008) BMC Struct Biol 8

PubMed: 18954462 | PubMedCentral: PMC2626596 | DOI: 10.1186/1472-6807-8-45

The ROC curves for retrieval of heme binding surfaces querying myoglobin from P. catodon (PDB: 1mbn ) against the GPSS library (h).

A visual depiction of an alignment between the heme binding pockets of myoglobin from P. catodon (PDB: 1mbn ) and structural genomics target hemoglobin alpha-1 (PDB: 1xq5 ) is shown in Figure 3 .

Using myoglobin from P. catodon (PDB: 1mbn , Figure 7ab ) as a query protein, we compared it to a non-redundant (<95% sequence identity) PDB set using BLAST[ 47 ].

Surfaces from myoglobin (CATH code = 1.10.490.10, PDB: 1mbn ), nitrophorin (CATH code = 1.40.128.20, PDB: 1np4 ), and inducible nitric oxide synthase (iNOS) (CATH code = 3.90.1230.10, PDB: 4nos )[ 46 ], representing extrema of heme binding, are shown in Figure 7 .

Heme binding proteins myoglobin (a, CATH code = 1.10.490.10, PDB: 1mbn ), nitrophorin (c, CATH code = 1.40.128.20, PDB: 1np4 ), and inducible nitric oxide synthase (iNOS) (e, CATH code = 3.90.1230.10, PDB: 4nos )[ 46 ].

Publication Year: 2008


Correlated single-crystal electronic absorption spectroscopy and X-ray crystallography at NSLS beamline X26-C.

(2011) J Synchrotron Radiat 18

PubMed: 21525643 | PubMedCentral: PMC3083912 | DOI: 10.1107/S0909049511006315

It was released in 1976 with the file name 1mbn , 14 years after he received the Nobel Prize in Chemistry with Max Perutz ‘for their studies of the structures of globular proteins’.

Publication Year: 2011


On the characterization and software implementation of general protein lattice models.

(2013) PLoS One 8

PubMed: 23555684 | PubMedCentral: PMC3612044 | DOI: 10.1371/journal.pone.0059504

In the first chart of Figure 1 , four sample molecules from different classes (all- , all- , , ), identified in PDB as 1MBN, 1GOF, 1BQB, 2FSU are considered.

Publication Year: 2013


Mechanics of proteins with a focus on atomic force microscopy.

(2013) J Nanobiotechnology 11 Suppl 1

PubMed: 24565326 | PubMedCentral: PMC4029730 | DOI: 10.1186/1477-3155-11-S1-S3

C) Cartoon representation of the protein myoglobin (PDB file 1MBN), mainly made of α-helices, showing the heme group as gray spheres and the oxygen molecule in red.

Publication Year: 2013


Similar structures to the E-to-H helix unit in the globin-like fold are found in other helical folds.

(2014) Biomolecules 4

PubMed: 24970216 | PubMedCentral: PMC4030988 | DOI: 10.3390/biom4010268

Figure 2 3D structures of ( a ) soybean leghemoglobin (PDB: 1FSL) and ( b ) sperm whale myoglobin (PDB: 1MBN).

The codes of the Protein Data Bank (PDB) are 1FSL and 1MBN, respectively.

The ADMs for soybean leghemoglobin (PDB: 1FSL) and sperm whale myoglobin (PDB: 1MBN) are presented in Figure 4 .

Figure 1 Amino acid sequence alignment of soybean leghemoglobin (PDB: 1FSL) and sperm whale myoglobin (PDB: 1MBN).

Protein(Source, PDB ID) Family Fold Region Hit by DALI Search with the Following Query(Z Score, rmsd (a) ) Leghemoglobin E-to-H (Soy Bean, 1fsl) Myoglobin E- to-H (Sperm Whale, 1mbn) circadian clock protein Kai A ( Synechococcus , 1R8J) Circadian clock protein KaiA, C-terminal domain KaiA/RbsU domain E-to-H helices (4.4, 3.8) E-to-H helices (7.0, 3.3) secretion control protein A chain( Yersinia , 1XL3) LcrE-like Type III secretion system domain EGH helices (2.0, 4.5) FGH helices (4.1, 3.9) cell invasion protein SipA ( Salmonella , 2FM9) SipA N-terminal domain-like SipA N-terminal domain-like E-to-H helices (2.9, 9.3) H helix (3.0, 8.0) transcriptional regulator RHA1_ro04179 ( Rodococcus , 2NP5) Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain GH helices (4.4, 9.7) GH helices (2.1, 4.7) hypothetical protein AF0060 ( E. coli , 2P06) AF0060-like all-alpha NTP pyrophosphatases GH helices with a part of the E helix (3.2, 4.8) GH helices (3.5, 3.5) (a): rms distance (Å) between the 3D structures of the aligned regions of the query structure and a hit protein.

Protein(Source, PDB) Number of Homologs Number of Conserved Residue Number of Residues Containing E-to-H Helices Leghemoglobin (soybean 1FSl) 45 34 88 Myoglobin (sperm whale 1MBN) 82 38 96 Circadian clock protein KaiA (Synechococcus, 1R8J) 49 50 98 Secretion control protein) A chain (Yersinia, 1XL3) 29 25 76 Cell invasion protein SipA (Salmonella, 2FM9) 6 0 79 Transcriptional regulator RHA1_ro04179 (Rodococcus, 2NP5) 3 0 74 Hypothetical protein AF0060 ( E. coli , 2P06) 0 0 81 Figure 8 Conserved hydrophobic residues in the E-to-H helix unit of ( a ) 1FSL, ( b ) 1MBN, ( c ) 1R8J, ( d ) 1XL3, ( e ) 2FM9, ( f ) 2NP5, and ( g ) 2P06.

Common Residue Patterns Specific to the E-to-H Helix Unit Defined from the Packing Patterns of Conserved Hydrophobic Residues A common residue pattern might be defined from the information of both conserved hydrophobic residues and the packing residues of the E-to-H helix unit in 1FSL, 1MBN, 1R8J and 1XL3.

Publication Year: 2014


The Protein Data Bank archive as an open data resource.

(2014) J Comput Aided Mol Des 28

PubMed: 25062767 | PubMedCentral: PMC4196035 | DOI: 10.1007/s10822-014-9770-y

Early structures included myoglobin ( 1 PDB ID 1mbn [ 6 , 7 ]), the first structure solved by X-ray crystallography, and small enzymes ( 2 top 4pti [ 48 ], bottom right 2cha [ 49 ], bottom left 3cpa [... 50 ]).

Publication Year: 2014