Citations in PubMed

Primary Citation PubMed: 12411581 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Representation of viruses in the remediated PDB archive.

(2008) Acta Crystallogr D Biol Crystallogr D64

PubMed: 18645236 | PubMedCentral: PMC2677383 | DOI: 10.1107/S0907444908017393

For the PBCV-1 virus (PDB code 1m4x ; Nandhagopal et al. , 2002 ▶ ), atomic coordinates are only provided for a small fraction (1/28th) of one icosahedral asymmetric unit containing three chai... s: a total of 3 × 28 × 60 chains and 16 284 240 atoms are required to build the complete capsid.

Complex cases such as the pseudocrystalline symmetry in icosahedral PBCV-1 (PDB entry 1m4x ; Nandhagopal et al. , 2002 ▶ ) can also be represented (Figs. 2 ▶ h and 2 ▶ i and Table 5 ▶ ).

PBCV-1 virus (PDB entry 1m4x ) is the most extreme case: the compressed storage size for the biounit file with 5040 chains is 1000 times bigger than the mmCIF or PDB file with three chains and matrices (0.3 Gb versus 0.3 Mb).

( h ) 1m4x , P. bursaria chorella virus type 1 (PBCV-1) algal virus shell (Nandhagopal et al. , 2002 ▶ ).

Publication Year: 2008

The RCSB Protein Data Bank: new resources for research and education.

(2013) Nucleic Acids Res 41

PubMed: 23193259 | PubMedCentral: PMC3531086 | DOI: 10.1093/nar/gks1200

For biological assemblies, surfaces are generated using the symmetry operation of the space group, which allows the display of even the largest assemblies in the PDB [i.e. the PBCV-1 virus capsid with... 5040 chains, PDB ID 1M4X ( 40 )] on a standard laptop computer.

Publication Year: 2013

PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4489256

The panel in the top left shows the icosahedral structure of the PBCV-1 virus capsid (PDB entry 1M4X) assembled from 1680 copies of the asymmetric unit which is highlighted within the capsid and shown... magnified below it (green).

Publication Year: 2015