Primary Citation PubMed: 12206667
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Exploring the binding of BACE-1 inhibitors using comparative binding energy analysis (COMBINE).
(2012) BMC Struct Biol 12
PubMed: 22925713 | PubMedCentral: PMC3533579 | DOI: 10.1186/1472-6807-12-21
From the comparative analysis of the BACE-1 X-ray structures, it is clear that the 10S loop, a short loop located at the base of the S 3 sp, displays two primary low-energy conformations: an open conf... rmation (e.g., 1W51, 1TQF, 2F3E and 2B8V) and a closed conformation (e.g., 1FKN, 1M4H and 1XS7).
The 46 X-ray structures of BACE-1/inhibitor complexes used in this study are 1W51, 1TQF, 1YM2, 1YM4, 2B8V, 2F3E, 2F3F, 2IQG, 2IRZ, 2IS0, 2OAH, 2OHL, 2OHM, 2OHP, 2OHQ, I2OHR, 2OHS, 2OHT, 2OHU, 2P83, 2PH6, 2B8L, 2QZL, 2ZE1, 2QP8, 2VIE, 2VJ7, 2VJ9, 2VNM, 2VNN, 2WF0, 2WF1, 2ZDZ, 2FDP, 3CIB, 3CIC, 3CID, 3DUY, 3DV1, 2P4J, 3FKT, 2QK5, 1XS7, 1FKN and 1M4H.
Publication Year: 2012
Application of computational methods for the design of BACE-1 inhibitors: validation of in silico modelling.
(2014) Int J Mol Sci 15
PubMed: 24663084 | PubMedCentral: PMC3975444 | DOI: 10.3390/ijms15035128
The worst poses were predicted for peptidic inhibitors from 1FKN, 1M4H and 1TQF crystal structures.
Publication Year: 2014
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