Primary Citation PubMed: 12196540
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Sequence and structure signatures of cancer mutation hotspots in protein kinases.
(2009) PLoS One 4
PubMed: 19834613 | PubMedCentral: PMC2759519 | DOI: 10.1371/journal.pone.0007485
For clarity, the SNPs density was mapped onto a representative kinase crystal structure (EGFR, pdb entry 1M14) by projecting the multiple sequence kinase alignment onto the protein structure.
Publication Year: 2009
Hsp90 inhibition differentially destabilises MAP kinase and TGF-beta signalling components in cancer cells revealed by kinase-targeted chemoproteomics.
(2012) BMC Cancer 12
PubMed: 22277058 | PubMedCentral: PMC3342885 | DOI: 10.1186/1471-2407-12-38
Structural analysis Structural information on ErbB1/EGFR (PDB 1m14 ) was obtained from the Protein Data Bank (PDB) and the structure of RIPK2 is from the SWISS-MODEL Repository [ 17 ], based on templa... e 2eva from PDB.
Publication Year: 2012
Crystal structures of the JAK2 pseudokinase domain and the pathogenic mutant V617F.
(2012) Nat Struct Mol Biol 19
PubMed: 22820988 | PubMedCentral: PMC3414675 | DOI: 10.1038/nsmb.2348
Ultimately, we were successful in placing the C lobe of JH2-WT with MOLREP 35 , using as a search model the C lobe (poly-alanine) of the epidermal growth factor receptor (EGFR) kinase domain (PDB code... 1M14).
An aggregate analysis of many predicted structures to reduce errors in protein structure comparison caused by conformational flexibility.
(2013) BMC Struct Biol 13 Suppl 1
PubMed: 24564934 | PubMedCentral: PMC3952246 | DOI: 10.1186/1472-6807-13-S1-S10
Enolase Superfamily (homogeneous): Enolases: 1e9i , 1iyx , 1pdy , 2pa6 , 2xsx , 2xsx Enolase Superfamily (homogeneous, redundant): Enolases: 1ebh , 1els , 1nel , 2al2 , 3enl , 7enl , 1te6 , 1ebg , 1on... Tyrosine Kinases (homogeneous): Small Gatekeeper residue: 1qcf , 1fgi , 1fpu , 1fvr , 1gjo , 1irk , 1k2p , 1m14 , 1m7n , 1qpc , 1r0p , 1t45 , 1u4d , 1yvj , 1ywn , 2src Tyrosine Kinases (homogeneous, redundant): Small Gatekeeper residue: 2hz4 , 2e2b , 2hyy , 2hz0 , 2hzn , 2hzi , 2xyn , 2hmi , 3kf4 , 3kfa , 3ms9 , 3mss Enolase Superfamily (heterogeneous): Enolases: 1e9i , 1ebh , 1iyx , 1pdy , 1te6 , 2pa6 , 2xsx , 3otr , Mandelate Racemase: 2ox4 , Muconate Lactonizing Enzyme: 2pgw , 2zad Tyrosine Kinases (heterogeneous): Small Gatekeeper residue: 2hz4 Large Gatekeeper residue: 1fvr , 1luf , 1rjb , 1sm2 , 1snu , 1snx Bolded structures were selected as templates.
Publication Year: 2013
Structure-functional prediction and analysis of cancer mutation effects in protein kinases.
(2014) Comput Math Methods Med 2014
PubMed: 24817905 | PubMedCentral: PMC4000980 | DOI: 10.1155/2014/653487
The mutational hotspots are displayed using the EGFR kinase (pdb entry 1M14).
Publication Year: 2014
Protein redox chemistry: post-translational cysteine modifications that regulate signal transduction and drug pharmacology.
(2014) Front Pharmacol 5
PubMed: 25339904 | PubMedCentral: PMC4186267 | DOI: 10.3389/fphar.2014.00224
(B) Surface structure of WT EGFR shows Cys 775 and Cys 797 as the two solvent-accessible cysteine residues (PDB 1M14).
Kin-Driver: a database of driver mutations in protein kinases.
(2014) Database (Oxford) 2014
PubMed: 25414382 | PubMedCentral: PMC4237945 | DOI: 10.1093/database/bau104
( A ) Mutation EGFR E746-A750del mapped onto the structure of the selected human EGFR (pdb code 1M14).
A dynamically coupled allosteric network underlies binding cooperativity in Src kinase.
(2015) Nat Commun 6
PubMed: 25600932 | PubMedCentral: PMC4300553 | DOI: 10.1038/ncomms6939
The key hydrogen bond between protonated Asp404 and Asp386 is seen in other kinase crystal structures (for example, PDB 1JOW and 1M14).
Publication Year: 2015
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