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Structural basis of the Methanothermobacter thermautotrophicus MCM helicase activity.
(2006) Nucleic Acids Res 34
PubMed: 17062628 | PubMedCentral: PMC1635305 | DOI: 10.1093/nar/gkl708
The handedness of the electron-density maps was determined by fitting the crystal structure of the Mth MCM N-terminal domain ( 5 ) (PDB accession code: 1LTL).
Publication Year: 2006
Coupling of DNA binding and helicase activity is mediated by a conserved loop in the MCM protein.
(2008) Nucleic Acids Res 36
PubMed: 18184696 | PubMedCentral: PMC2275104 | DOI: 10.1093/nar/gkm1160
Three dimensional structure of the dodecameric N-terminal portion of the M. thermautotrophicus MCM protein [PDB ID: 1LTL ( 6 )] is shown with the loop between β7 and β8 highlighted in ... ed.
The structure was constructed using PyMOL and PDB ID: 1LTL.
Publication Year: 2008
Structural analysis of the Sulfolobus solfataricus MCM protein N-terminal domain.
PubMed: 18417534 | PubMedCentral: PMC2425480 | DOI: 10.1093/nar/gkn183
A search model was built from the coordinates of one subunit of Mth MCM (PDB code: 1LTL) ( 17 ) by maintaining all identical amino acids but mutating all the others into serine residues.
The structure of SSO2064, the first representative of Pfam family PF01796, reveals a novel two-domain zinc-ribbon OB-fold architecture with a potential acyl-CoA-binding role.
(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66
PubMed: 20944206 | PubMedCentral: PMC2954200 | DOI: 10.1107/S1744309110002514
Stereo ribbon diagram showing the structural superposition of SSO2064 (PDB code 3irb ; residues 8–144; blue) with ( a ) the mini-chromosome maintenance complex (MCM) from M. thermoautotrophicu... (PDB code 1ltl ; residues 95–242; gray) and ( b ) chains A (residues 28–83; cyan) and Y (residues 10–71; magenta) from the large ribosomal subunit from H. marismortui (PDB code 1jj2 ; Klein et al. , 2001 ▶ ).
Publication Year: 2010
Different residues on the surface of the Methanothermobacter thermautotrophicus MCM helicase interact with single- and double-stranded DNA.
(2010) Archaea 2010
PubMed: 21151660 | PubMedCentral: PMC2997501 | DOI: 10.1155/2010/505693
(b) Side and top views of the three-dimensional structure of the dodecameric N-terminal portion of the M. thermautotrophicus MCM protein (PDB ID: 1LTL [ 4 ]) are shown.
(c) Side and top views of the three-dimensional structure of the monomeric N-terminal portion of the M. thermautotrophicus MCM protein (PDB ID: 1LTL [ 4 ]) are shown.
Structural analysis of bacteriophage T4 DNA replication: a review in the Virology Journal series on bacteriophage T4 and its relatives.
(2010) Virol J 7
PubMed: 21129204 | PubMedCentral: PMC3012046 | DOI: 10.1186/1743-422X-7-359
T4 and Related Phage T7 Phage E. coli Eukaryotes Replicative DNA polymerase gp43 polymerase (pdb 1ig9 , 1clq , 1noy , 1ih7 ) Gene 5 Polymerase (pdb 1t7p , 1skr , 1t8e , 1x9m ) Pol III (α... 5;θ) (pdb 2hnh , 1ido ) Pol δ (subunits p125, p50, p66, p12) (pdb 3e0j ) Sliding clamp gp45 protein (pdb 1czd , 1b8h ) E. coli Thioredoxin (pdb 1t7p , 1skr ) β (pdb 2pol ) PCNA (pdb 1plr , 1axc , 1ul1 ) Clamp loader gp44/62 protein γ complex (γδδ'ψχ) (pdb 1jr3 , 1jqj , 3glf ) RF-C (subunits p140, p40, p38, p37, p36) (pdb 1sxj ) ssDNA binding protein gp32 protein (pdb 1gpc ) Gene 2.5 protein (pdb 1je5 ) SSB (pdb 1qvc ) RP-A (subunits p14, p32, p70) (pdb 1fgu , 2b29 , 1jmc , 1l1o , 2pi2 ) Replicative helicase gp41 helicase Gene 4 helicase (pdb 1e0j , 1e0k , 1q57 ) DnaB (pdb 1b79 , 2r6a ) MCM (pdb 3f9v , 1ltl ) helicase assembly protein gp59 protein (pdb 1c1k ) DnaC, PriA (pdb 3ec2 ) primase gp61 primase Gene 4 primase (pdb 1nui , 1q57 ) DnaG (pdb 1dd9 , 3b39 , 2r6c ) Pol α/primase (pdb 3flo ) 5' to 3' Exonuclease RNase H (pdb 1tfr , 2ihn ) Pol I N-domain FEN-1, RNase H1 (pdb 1ul1 , 2qk9 ) DNA ligase 1 T4 ligase (gp30) T7 ligase (pdb 1a0i ) DNA ligase (pdb 2owo ) DNA ligase I Figure 2 The molecular models, rendered to scale, of a DNA replication fork .
Genome wide comparative comprehensive analysis of Plasmodium falciparum MCM family with human host.
(2012) Commun Integr Biol 5
PubMed: 23336032 | PubMedCentral: PMC3541329 | DOI: 10.4161/cib.21759
54 The structural modeling of the PfMCM9 was therefore done using the known crystal structure of this homolog as the template (PDB number 1LTL at www.rcsb.org ).
Publication Year: 2012
Expression, purification and biochemical characterization of Schizosaccharomyces pombe Mcm4, 6 and 7.
(2013) BMC Biochem 14
PubMed: 23444842 | PubMedCentral: PMC3605359 | DOI: 10.1186/1471-2091-14-5
In addition, we also performed structural alignments and comparison using solved archaeal MCM structures, such as structures of Methanothermobacter thermautotrophicus MCM (MtMCM, PDB:1LTL) and Sulfolo... us solfataricus MCM (SsoMCM, PDB:3F9V), to more precisely determine the appropriate boundaries of the predicted secondary structures [ 18 , 21 ].
Publication Year: 2013
Cryo-EM structure of a helicase loading intermediate containing ORC-Cdc6-Cdt1-MCM2-7 bound to DNA.
(2013) Nat Struct Mol Biol 20
PubMed: 23851460 | PubMedCentral: PMC3735830 | DOI: 10.1038/nsmb.2629
( g ) Bottom and back side views of the OCCM map shown in semi-transparent surface, docked with homology crystal structure of the Archaeal MCM NTD hexamer (PDB ID: 1LTL) 40 .
The PS1 hairpin of Mcm3 is essential for viability and for DNA unwinding in vitro.
(2013) PLoS One 8
PubMed: 24349215 | PubMedCentral: PMC3859580 | DOI: 10.1371/journal.pone.0082177
A model for the Mcm2-7 hexamer was then assembled by superimposing the N-terminal domains of the Mcm2 through Mcm7 subunits on the N-terminal domains of the Methanobacterium thermoautotrophicum hexame... (PDB ID 1LTL;  ).
DNA binding polarity, dimerization, and ATPase ring remodeling in the CMG helicase of the eukaryotic replisome.
(2014) Elife 3
PubMed: 25117490 | PubMedCentral: PMC4359367 | DOI: 10.7554/eLife.03273
( C ) Docked structures into segmented density for: top —a near-full-length, archaeal MCM monomer Mcm4 (PDB ID 3F9V); middle —the GINS complex (PDB ID 2Q9Q and 3ANW, ‘Materials... and methods’); bottom —the archaeal Mcm N-terminal domain hexamer (PDB ID 1LTL and 2VL6, ‘Materials and methods’).
Fletcher RJ , Bishop BE , Leon RP , Sclafani RA , Ogata CM , Chen XS , 2003 , The dodecamer structure of mcm from archaeal M. thermoautotrophicum , http://www.rcsb.org/pdb/explore/explore.do?structureId=1LTL , Publicly available at RCSB Protein Data Bank.
( B ) Computationally derived 2D projections of double-hexameric 3D CMG models in which Mcm2-7 N-terminal domain dimers (modeled on an archaeal Mcm crystal structure of this region, PDB ID 1LTL) have been manually offset by distinct rotational registers.
The N-terminal Mcm2-7 collar was modelled by superposing protomers of the Methanothermobacter thermautotrophicus MCM (PDB entry 1LTL) or the Sulfolobus solfataricus MCM (PDB entry 2VL6) onto the isolated oligomerization subdomain of the M. thermautotrophicus MCM.
Publication Year: 2014
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