Primary Citation PubMed: 8230225
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Information-driven protein-DNA docking using HADDOCK: it is a matter of flexibility.
(2006) Nucleic Acids Res 34
PubMed: 16820531 | PubMedCentral: PMC1500871 | DOI: 10.1093/nar/gkl412
The PDB entry codes of the respective complexes and their unbound components are as follows: 3CRO, crystal structures of the Cro/O1R complex ( 19 ); 1ZUG, NMR ensemble of the unbound Cro monomer ( 23 ... ; 1LCC, NMR ensemble of the Lac/O1 complex ( 24 ); 1LQC, NMR ensemble of the unbound monomer of the Lac headpiece ( 25 ); 1BDT, crystal structure of the Arc/DNA complex ( 26 ) and 1ARQ, NMR ensemble of the unbound Arc monomer ( 27 ).
Publication Year: 2006
Quantitative evaluation of protein-DNA interactions using an optimized knowledge-based potential.
(2005) Nucleic Acids Res 33
PubMed: 15673715 | PubMedCentral: PMC548349 | DOI: 10.1093/nar/gki204
Non-TF/DNA refers to 27 non-transcription factor/DNA complexes (including 1mse, 1tro, 1ca5, 2ezd, 1lcc, 1cjg, 1gcc, 1azp, 1az0, 1b69, 1tf3, 1bhm, 1ecr, 1cw0, 1hcr, 1yui, 1sx9, 7icr, 1qaa, 1jey, 1nk2, ... tau, 5gat, 1qrv, 1a73, 2gat and 1j1v), TF/DNA refers to remaining 21 transcription factor complexes (including 1lmb, 1cma, 1apl, 1par, 1run, 1glu, 1nfk, 1efa, 1mdy, 1tsr, 1ipp, 1ytf, 1vkx, 1oct, 1ihf, 1bc7, 1aay, 1cez, 1yrn, 1ysa and 1b3t).
Publication Year: 2005
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