Citations in PubMed

Primary Citation PubMed: 12488100 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 7

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Identification of new, well-populated amino-acid sidechain rotamers involving hydroxyl-hydrogen atoms and sulfhydryl-hydrogen atoms.

(2008) BMC Struct Biol 8

PubMed: 18840291 | PubMedCentral: PMC2569941 | DOI: 10.1186/1472-6807-8-41

This results in 27 structures: 1AHO , 1DY5 , 1JM1 , 1M40 , 1RW1 , 2AXW , 2FDN , 1BXO , 1EUW , 1KQP , 1MUW , 1TT8 , 2BF9 , 2FFY , 1C75 , 1F94 , 1L9L , 1O7J , 1UCS , 2CAL , 2H5C , 1CEX , 1GQV , 1LS1 , 1... B9 , 2AWK , 2ERL .

Publication Year: 2008


Relative stabilities of conserved and non-conserved structures in the OB-fold superfamily.

(2009) Int J Mol Sci 10

PubMed: 19564956 | PubMedCentral: PMC2695284 | DOI: 10.3390/ijms10052412

Of the resulting 80 structures we selected the top 10 with predominantly α-helical structure (PDB-codes: 1L9L, 207A, 1MN8_D, 1OAI, 2NRL, 2PVB, 1C75A, 1XG0_C, 1MC2, 1XMK); the top 10 all-... 2; structure (PDB-codes: 1F94, 2CHH, 1OD3, 1OK0, 2GUD, 2BT9_B, 209S, 1W0N, 1ZUU, 2RH2); and the 10 with the ratio of residues in α-helix and β-sheet structure closest to 1 (PDB-codes: 2JFR, 2I4A; 1F9Y, 1MWQ 2QSJA, 2NWZ, 1XG0_B, 2GGC, 1IUA, 3DHA).

Publication Year: 2009


Synonymous codon usage influences the local protein structure observed.

(2010) Nucleic Acids Res 38

PubMed: 20530529 | PubMedCentral: PMC2965230 | DOI: 10.1093/nar/gkq495

PDB structures 2GFF (A) and 1L9L (B) are used to illustrate the examples.

Publication Year: 2010


Insights into the membrane interactions of the saposin-like proteins Na-SLP-1 and Ac-SLP-1 from human and dog hookworm.

(2011) PLoS One 6

PubMed: 21991310 | PubMedCentral: PMC3184995 | DOI: 10.1371/journal.pone.0025369

Na -SLP-1 Ac -SLP-1 Conformation of Sap fold PDB accession code rms deviation (Å) rms deviation (Å) Na -SLP-1 (mol A) closed - 3.2 Na -SLP-1 (mol B) closed 0.55 3.1 pore forming protei... from E. histolytica closed 1of9 2.3 3.1 caenopore-5 (slp 5 from C. elegans ) closed 2js9 2.6 3.2 caenopore-5 (slp 5 from C. elegans ) closed 2jsa 2.5 2.3 human granulysin closed 1l9l 2.5 2.5 human saposin B open 1n69 2.0 2.9 human saposin C closed 1m12 2.2 2.3 human saposin C closed 2gtg 2.1 2.2 human saposin C open 2qyp 2.8 2.6 human saposin C open 2z9a 2.0 3.0 human saposin C in SDS micelles open 1sn6 3.1 2.8 human saposin D closed 2rb3 1.9 2.6 Superposition calculations were carried out using the SSM algorithm implemented in SUPERPOSE in the CCP4 suite [42] .

Publication Year: 2011


Protein design using continuous rotamers.

(2012) PLoS Comput Biol 8

PubMed: 22279426 | PubMedCentral: PMC3257257 | DOI: 10.1371/journal.pcbi.1002335

Native sequence recovery was then performed on the 43 proteins with PDB ids: 1lni, 1ok0, 1psr, 1t8k, 1u2h, 1usm, 1wxc, 1zzk, 2cov, 2fhz, 2hs1, 2r2z, 3d3b, 3dnj, 1l9l, 1r6j, 1u07, 1ucs, 1vbw, 1y6x, 2hi... , 2j8b, 2p5k, 2wj5, 3g21, 3hfo, 3jtz, 1aho, 1f94, 1oai, 1vfy, 2b97, 2cc6, 2cg7, 2dsx, 2fma, 2gom, 2hba, 2hlr, 2ic6, 3g36, 3i2z, and 1i27.

Publication Year: 2012


Human antimicrobial peptides and proteins.

(2014) Pharmaceuticals (Basel) 7

PubMed: 24828484 | PubMedCentral: PMC4035769 | DOI: 10.3390/ph7050545

Figure 1 Three-dimensional structures of human antimicrobial peptides from the α-helical family: ( A ) and ( B ) human cathelicidin LL-37 determined by NMR spectroscopy (PDB ID: 2K6O); ( C ) d... rmcidin determined by X-ray crystallography (PDB ID, 2YMK); and ( D ) granulysin determined by X-ray diffraction (PDB ID: 1L9L).

Publication Year: 2014


Macromolecular ab initio phasing enforcing secondary and tertiary structure.

(2015) IUCrJ 2

PubMed: 25610631 | PubMedCentral: PMC4285884 | DOI: 10.1107/S2052252514024117

The PDB ID codes for this set of tests are: 1a6m , 1byi , 1byz , 1c75 , 1eb6 , 1ejg , 1ew4 , 1fk5 , 1g2r , 1g2y , 1g4i , 1g6u , 1gvd , 1gxu , 1i2t , 1j8b , 1kth , 1l9l , 1n9b , 1oks , 1ox3 , 1pz4 , 1q... d , 1r7j , 1riy , 1rw1 , 1t07 , 1tgr , 1u84 , 1u9p , 1uj8 , 1use , 1usm , 1v2z , 1vyi , 1whz , 1wpa , 1y6x , 1yu5 , 1z96 , 1zva , 1zzk , 2b8i , 2c60 , 2ewt , 2f60 , 2fi0 , 2fq3 , 2fu2 , 2fvy , 2g7o , 2ggc , 2gkr , 2gpi , 2h8e , 2h9u , 2hdz , 2hl7 , 2hpj , 2i5f , 2igp , 2ip6 , 2ivy , 2nuh , 2o1k , 2o37 , 2o4t , 2o7a , 2oqq , 2ouf , 2oxo , 2p5k , 2p6v , 2pk8 , 2pst , 2q2f , 2qff , 2qmt , 2qsb , 2qvo , 2r31 , 2rhf , 2v75 , 2vkl , 2wuj , 2zqe , 2zqm , 2zxy , 3a4c , 3bri , 3ce7 , 3cec , 3cq1 , 3df8 , 3e21 , 3e9v , 3efg , 3fbl , 3fmy , 3g21 , 3g2b , 3g46 , 3goe , 3h01 , 3hro , 3idw , 3jsc , 3jtz , 3jvl , 3kp8 , 3mxz , 3o55 , 3oou , 3osh , 3qm9 , 3rq9 , 3s6e , 3soj , 3ui4 , 3vrc , 3wh1 , 3zzp , 4eic , 4g78 , 4g9s , 4hs1 , 4mzc , 4oo4 .

Publication Year: 2015